Difference between revisions of "RXN-14786"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GART-RXN GART-RXN] == * direction: ** reversible * common-name: ** phosphoribosylglycinamide formyl...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13297 RXN-13297] == * direction: ** left-to-right * common-name: ** 3-oxo-lignoceronyl-coa synt...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GART-RXN GART-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13297 RXN-13297] ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** phosphoribosylglycinamide formyltransferase
+
** 3-oxo-lignoceronyl-coa synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.2.2 ec-2.1.2.2]
+
** [http://enzyme.expasy.org/EC/2.3.1.199 ec-2.3.1.199]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[5-PHOSPHO-RIBOSYL-GLYCINEAMIDE]][c] '''+''' 1 [[FORMYL-THF-GLU-N]][c] '''<=>''' 1 [[5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[THF-GLU-N]][c]
+
* 1 [[CPD-10279]][c] '''+''' 1 [[MALONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD-14273]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ06408]]
+
* Gene: [[SJ11672]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ06616]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ19629]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ00613]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6613]], tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6613 PWY-6613]
+
* [[PWY-7036]], very long chain fatty acid biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7036 PWY-7036]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''14''' reactions found over '''16''' reactions in the full pathway
−
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=left-to-right}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15056 15056]
+
{{#set: common-name=3-oxo-lignoceronyl-coa synthase}}
−
* LIGAND-RXN:
+
{{#set: ec-number=ec-2.3.1.199}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R04325 R04325]
+
{{#set: nb gene associated=4}}
−
* UNIPROT:
+
{{#set: nb pathway associated=1}}
−
** [http://www.uniprot.org/uniprot/P21872 P21872]
 
−
** [http://www.uniprot.org/uniprot/P00967 P00967]
 
−
** [http://www.uniprot.org/uniprot/P16340 P16340]
 
−
** [http://www.uniprot.org/uniprot/P22102 P22102]
 
−
** [http://www.uniprot.org/uniprot/Q9PIU2 Q9PIU2]
 
−
** [http://www.uniprot.org/uniprot/Q9JTJ1 Q9JTJ1]
 
−
** [http://www.uniprot.org/uniprot/P43846 P43846]
 
−
** [http://www.uniprot.org/uniprot/Q64737 Q64737]
 
−
** [http://www.uniprot.org/uniprot/Q42805 Q42805]
 
−
** [http://www.uniprot.org/uniprot/Q9UUK7 Q9UUK7]
 
−
** [http://www.uniprot.org/uniprot/P12040 P12040]
 
−
** [http://www.uniprot.org/uniprot/P08179 P08179]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=phosphoribosylglycinamide formyltransferase}}
 
−
{{#set: ec-number=ec-2.1.2.2}}
 
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=2}}
 
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 09:30, 27 August 2019

Reaction RXN-13297

  • direction:
    • left-to-right
  • common-name:
    • 3-oxo-lignoceronyl-coa synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7036, very long chain fatty acid biosynthesis II: PWY-7036
    • 14 reactions found over 16 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-14786&oldid=35835"