Difference between revisions of "RXN-14803"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9235 RXN-9235] == * direction: ** left-to-right * common-name: ** ubiquinone biosynthesis methy...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2OXOGLUTDECARB-RXN 2OXOGLUTDECARB-RXN] == * direction: ** left-to-right * common-name: ** 2-oxoglut...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9235 RXN-9235] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2OXOGLUTDECARB-RXN 2OXOGLUTDECARB-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** ubiquinone biosynthesis methyltransferase
+
** 2-oxoglutarate decarboxylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.1.201 ec-2.1.1.201]
+
** [http://enzyme.expasy.org/EC/1.2.4.2 ec-1.2.4.2]
 +
* synonymous:
 +
** 2-oxoglutarate decarboxylation
 +
** oxoglutarate decarboxylase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-9869]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[CPD-9871]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[Oxo-glutarate-dehydrogenase-lipoyl]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[Oxo-glutarate-dehydro-suc-DH-lipoyl]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ21701]]
−
* Gene: [[SJ02693]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ07072]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* Gene: [[SJ13629]]
−
* Gene: [[SJ00609]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* Gene: [[SJ06474]]
−
* Gene: [[SJ11757]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ20751]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ11297]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ02842]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5857]], ubiquinol-10 biosynthesis (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5857 PWY-5857]
+
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
−
** '''3''' reactions found over '''8''' reactions in the full pathway
+
** '''10''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-5872]], ubiquinol-10 biosynthesis (eukaryotic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5872 PWY-5872]
+
* [[PWY-5084]], 2-oxoglutarate decarboxylation to succinyl-CoA: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5084 PWY-5084]
−
** '''3''' reactions found over '''9''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=44765 44765]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12189 12189]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P23129 P23129]
 +
** [http://www.uniprot.org/uniprot/Q02218 Q02218]
 +
** [http://www.uniprot.org/uniprot/Q60597 Q60597]
 +
** [http://www.uniprot.org/uniprot/Q9JRJ8 Q9JRJ8]
 +
** [http://www.uniprot.org/uniprot/P20967 P20967]
 +
** [http://www.uniprot.org/uniprot/P0AFG3 P0AFG3]
 +
** [http://www.uniprot.org/uniprot/P20707 P20707]
 +
** [http://www.uniprot.org/uniprot/P51056 P51056]
 +
** [http://www.uniprot.org/uniprot/Q56600 Q56600]
 +
** [http://www.uniprot.org/uniprot/O49541 O49541]
 +
** [http://www.uniprot.org/uniprot/Q59106 Q59106]
 +
** [http://www.uniprot.org/uniprot/Q9M2T8 Q9M2T8]
 +
** [http://www.uniprot.org/uniprot/Q9ZRQ2 Q9ZRQ2]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=ubiquinone biosynthesis methyltransferase}}
+
{{#set: common-name=2-oxoglutarate decarboxylase}}
−
{{#set: ec-number=ec-2.1.1.201}}
+
{{#set: ec-number=ec-1.2.4.2}}
−
{{#set: nb gene associated=7}}
+
{{#set: synonymous=oxoglutarate decarboxylase|2-oxoglutarate decarboxylation}}
 +
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=2}}
 
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:30, 27 August 2019

Reaction 2OXOGLUTDECARB-RXN

  • direction:
    • left-to-right
  • common-name:
    • 2-oxoglutarate decarboxylase
  • ec-number:
  • synonymous:
    • 2-oxoglutarate decarboxylation
    • oxoglutarate decarboxylase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY66-398, TCA cycle III (animals): PWY66-398
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-5084, 2-oxoglutarate decarboxylation to succinyl-CoA: PWY-5084
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links






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