Difference between revisions of "RXN-14950"
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(Created page with "Category:reaction == Reaction RXN-13927 == * direction: ** reversible * common-name: ** l-2-hydroxycarboxylate dehydrogenase (nad+) * ec-number: ** [http://enzyme.expasy.o...") |
(Created page with "Category:reaction == Reaction 2.7.7.8-RXN == * direction: ** reversible * common-name: ** polynucleotide phosphorylase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.7.8...") |
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| Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction RXN | + | == Reaction 2.7.7.8-RXN == |
* direction: | * direction: | ||
** reversible | ** reversible | ||
* common-name: | * common-name: | ||
| − | ** | + | ** polynucleotide phosphorylase |
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/2.7.7.8 ec-2.7.7.8] |
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[Pi]][c] '''+''' 1 [[ssRNAs]][c] '''<=>''' 1 [[Nucleoside-Diphosphates]][c] '''+''' 1 [[ssRNAs]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ10890]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
| + | * Gene: [[SJ07492]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
| + | * Gene: [[SJ14408]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
== Reconstruction information == | == Reconstruction information == | ||
| + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22099 22099] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
| − | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R07282 R07282] |
| − | * | + | * UNIPROT: |
| − | ** [http://www. | + | ** [http://www.uniprot.org/uniprot/P44584 P44584] |
| + | ** [http://www.uniprot.org/uniprot/Q9PN44 Q9PN44] | ||
| + | ** [http://www.uniprot.org/uniprot/P05055 P05055] | ||
| + | ** [http://www.uniprot.org/uniprot/Q9JV72 Q9JV72] | ||
| + | ** [http://www.uniprot.org/uniprot/P41121 P41121] | ||
| + | ** [http://www.uniprot.org/uniprot/P50849 P50849] | ||
| + | ** [http://www.uniprot.org/uniprot/P72659 P72659] | ||
| + | ** [http://www.uniprot.org/uniprot/O24288 O24288] | ||
| + | ** [http://www.uniprot.org/uniprot/Q8CJQ6 Q8CJQ6] | ||
| + | ** [http://www.uniprot.org/uniprot/O32966 O32966] | ||
{{#set: direction=reversible}} | {{#set: direction=reversible}} | ||
| − | {{#set: common-name= | + | {{#set: common-name=polynucleotide phosphorylase}} |
| − | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-2.7.7.8}} |
| − | {{#set: nb gene associated= | + | {{#set: nb gene associated=3}} |
{{#set: nb pathway associated=0}} | {{#set: nb pathway associated=0}} | ||
| − | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
| − | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 13:16, 14 January 2021
Contents
Reaction 2.7.7.8-RXN
- direction:
- reversible
- common-name:
- polynucleotide phosphorylase
- ec-number:
Reaction formula
- 1 Pi[c] + 1 ssRNAs[c] <=> 1 Nucleoside-Diphosphates[c] + 1 ssRNAs[c]
Gene(s) associated with this reaction
- Gene: SJ10890
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ07492
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ14408
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
