Difference between revisions of "RXN-15006"

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(Created page with "Category:reaction == Reaction RXN-10979 == * direction: ** left-to-right * common-name: ** 5-diphosphoinositol-pentakisphosphate 3-kinase * ec-number: ** [http://enzyme.ex...")
(Created page with "Category:reaction == Reaction O-SUCCHOMOSERLYASE-RXN == * direction: ** reversible * common-name: ** cystathionine gamma-synthase * ec-number: ** [http://enzyme.expasy.org...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-10979 ==
+
== Reaction O-SUCCHOMOSERLYASE-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** 5-diphosphoinositol-pentakisphosphate 3-kinase
+
** cystathionine gamma-synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.4.24 ec-2.7.4.24]
+
** [http://enzyme.expasy.org/EC/2.5.1.48 ec-2.5.1.48]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[5-DIPHOSPHO-1D-MYO-INOSITOL-12346P]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[CPD-11939]][c]
+
* 1 [[CYS]][c] '''+''' 1 [[O-SUCCINYL-L-HOMOSERINE]][c] '''<=>''' 1 [[L-CYSTATHIONINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SUC]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02918]]
+
* Gene: [[SJ05358]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ02917]]
+
* Gene: [[SJ05357]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ06607]]
+
* Gene: [[SJ20026]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6369]], inositol diphosphates biosynthesis:
+
* [[PWY-I9]], L-cysteine biosynthesis VI (from L-methionine):
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-801]], homocysteine and cysteine interconversion:
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I:
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
* RHEA:
−
{{#set: common-name=5-diphosphoinositol-pentakisphosphate 3-kinase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20397 20397]
−
{{#set: ec-number=ec-2.7.4.24}}
+
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03260 R03260]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P0A4K2 P0A4K2]
 +
** [http://www.uniprot.org/uniprot/Q9CEC6 Q9CEC6]
 +
** [http://www.uniprot.org/uniprot/P38675 P38675]
 +
** [http://www.uniprot.org/uniprot/P24601 P24601]
 +
** [http://www.uniprot.org/uniprot/P00935 P00935]
 +
** [http://www.uniprot.org/uniprot/O04981 O04981]
 +
** [http://www.uniprot.org/uniprot/O04982 O04982]
 +
** [http://www.uniprot.org/uniprot/O81334 O81334]
 +
** [http://www.uniprot.org/uniprot/Q79VD9 Q79VD9]
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=cystathionine gamma-synthase}}
 +
{{#set: ec-number=ec-2.5.1.48}}
 
{{#set: nb gene associated=3}}
 
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:20, 14 January 2021

Reaction O-SUCCHOMOSERLYASE-RXN

  • direction:
    • reversible
  • common-name:
    • cystathionine gamma-synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-I9, L-cysteine biosynthesis VI (from L-methionine):
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-801, homocysteine and cysteine interconversion:
    • 3 reactions found over 4 reactions in the full pathway
  • HOMOSER-METSYN-PWY, L-methionine biosynthesis I:
    • 4 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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