Difference between revisions of "RXN-15029"

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(Created page with "Category:reaction == Reaction 1.2.4.4-RXN == * direction: ** reversible * common-name: ** 3-methyl-2-oxobutanoate dehydrogenase * ec-number: ** [http://enzyme.expasy.org/E...")
(Created page with "Category:reaction == Reaction 2KETO-3METHYLVALERATE-RXN == * direction: ** reversible * common-name: ** (s)-3-methyl-2-oxopentanoate dehydrogenase (acylating) * ec-number:...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 1.2.4.4-RXN ==
+
== Reaction 2KETO-3METHYLVALERATE-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** 3-methyl-2-oxobutanoate dehydrogenase
+
** (s)-3-methyl-2-oxopentanoate dehydrogenase (acylating)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.2.4.4 ec-1.2.4.4]
+
** [http://enzyme.expasy.org/EC/1.2.1 ec-1.2.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[BCAA-dehydrogenase-lipoyl]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[BCAA-dehydrogenase-2MP-DH-lipoyl]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[2-KETO-3-METHYL-VALERATE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[2-METHYL-BUTYRYL-COA]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ11017]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ18449]]
 
* Gene: [[SJ18449]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ11017]]
+
* Gene: [[SJ11016]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5046]], 2-oxoisovalerate decarboxylation to isobutanoyl-CoA:
+
* [[PWY-5108]], L-isoleucine biosynthesis V:
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[ILEUDEG-PWY]], L-isoleucine degradation I:
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13460 13460]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30910 30910]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01701 R01701]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03171 R03171]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P21839 P21839]
 
−
** [http://www.uniprot.org/uniprot/P21953 P21953]
 
−
** [http://www.uniprot.org/uniprot/P37940 P37940]
 
−
** [http://www.uniprot.org/uniprot/Q9PK54 Q9PK54]
 
−
** [http://www.uniprot.org/uniprot/P37941 P37941]
 
−
** [http://www.uniprot.org/uniprot/P11178 P11178]
 
−
** [http://www.uniprot.org/uniprot/P12694 P12694]
 
−
** [http://www.uniprot.org/uniprot/P09061 P09061]
 
−
** [http://www.uniprot.org/uniprot/P09060 P09060]
 
−
** [http://www.uniprot.org/uniprot/P11960 P11960]
 
−
** [http://www.uniprot.org/uniprot/O84344 O84344]
 
−
** [http://www.uniprot.org/uniprot/Q9Z9E8 Q9Z9E8]
 
−
** [http://www.uniprot.org/uniprot/Q9I1M2 Q9I1M2]
 
−
** [http://www.uniprot.org/uniprot/P35738 P35738]
 
−
** [http://www.uniprot.org/uniprot/P50136 P50136]
 
−
** [http://www.uniprot.org/uniprot/O48615 O48615]
 
−
** [http://www.uniprot.org/uniprot/O03849 O03849]
 
−
** [http://www.uniprot.org/uniprot/Q53592 Q53592]
 
−
** [http://www.uniprot.org/uniprot/Q53593 Q53593]
 
−
** [http://www.uniprot.org/uniprot/O82450 O82450]
 
−
</div>
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=3-methyl-2-oxobutanoate dehydrogenase}}
+
{{#set: common-name=(s)-3-methyl-2-oxopentanoate dehydrogenase (acylating)}}
−
{{#set: ec-number=ec-1.2.4.4}}
+
{{#set: ec-number=ec-1.2.1}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Revision as of 15:38, 5 January 2021

Reaction 2KETO-3METHYLVALERATE-RXN

  • direction:
    • reversible
  • common-name:
    • (s)-3-methyl-2-oxopentanoate dehydrogenase (acylating)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5108, L-isoleucine biosynthesis V:
    • 2 reactions found over 3 reactions in the full pathway
  • ILEUDEG-PWY, L-isoleucine degradation I:
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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