Difference between revisions of "RXN-15067"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction OROPRIBTRANS-RXN == * direction: ** reversible * common-name: ** orotate phosphoribosyltransferase * ec-number: ** [http://enzyme.expasy.org/...")
(Created page with "Category:reaction == Reaction 1TRANSKETO-RXN == * direction: ** reversible * common-name: ** transketolase * ec-number: ** [http://enzyme.expasy.org/EC/2.2.1.1 ec-2.2.1.1]...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction OROPRIBTRANS-RXN ==
+
== Reaction 1TRANSKETO-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** orotate phosphoribosyltransferase
+
** transketolase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.4.2.10 ec-2.4.2.10]
+
** [http://enzyme.expasy.org/EC/2.2.1.1 ec-2.2.1.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[OROTIDINE-5-PHOSPHATE]][c] '''+''' 1 [[PPI]][c] '''<=>''' 1 [[OROTATE]][c] '''+''' 1 [[PRPP]][c]
+
* 1 [[D-SEDOHEPTULOSE-7-P]][c] '''+''' 1 [[GAP]][c] '''<=>''' 1 [[RIBOSE-5P]][c] '''+''' 1 [[XYLULOSE-5-PHOSPHATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02816]]
+
* Gene: [[SJ12529]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12026]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7791]], UMP biosynthesis III:
+
* [[P124-PWY]], Bifidobacterium shunt:
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''12''' reactions found over '''15''' reactions in the full pathway
−
* [[PWY-7790]], UMP biosynthesis II:
+
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''12''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-5686]], UMP biosynthesis I:
+
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle):
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[P21-PWY]], pentose phosphate pathway (partial):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch):
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5723]], Rubisco shunt:
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
Line 28: Line 42:
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10383 10383]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10511 10511]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01870 R01870]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01641 R01641]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P08309 P08309]
+
** [http://www.uniprot.org/uniprot/P29401 P29401]
−
** [http://www.uniprot.org/uniprot/P11172 P11172]
+
** [http://www.uniprot.org/uniprot/P33570 P33570]
−
** [http://www.uniprot.org/uniprot/P18132 P18132]
+
** [http://www.uniprot.org/uniprot/P21725 P21725]
−
** [http://www.uniprot.org/uniprot/P77889 P77889]
+
** [http://www.uniprot.org/uniprot/Q58094 Q58094]
−
** [http://www.uniprot.org/uniprot/P0A5U0 P0A5U0]
+
** [http://www.uniprot.org/uniprot/Q9JTR1 Q9JTR1]
−
** [http://www.uniprot.org/uniprot/Q9PIR1 Q9PIR1]
+
** [http://www.uniprot.org/uniprot/Q9CF56 Q9CF56]
−
** [http://www.uniprot.org/uniprot/O67742 O67742]
+
** [http://www.uniprot.org/uniprot/P21726 P21726]
−
** [http://www.uniprot.org/uniprot/O58855 O58855]
+
** [http://www.uniprot.org/uniprot/P47312 P47312]
−
** [http://www.uniprot.org/uniprot/Q9Z7U6 Q9Z7U6]
+
** [http://www.uniprot.org/uniprot/Q9PM31 Q9PM31]
−
** [http://www.uniprot.org/uniprot/Q9Y9D8 Q9Y9D8]
+
** [http://www.uniprot.org/uniprot/P43757 P43757]
−
** [http://www.uniprot.org/uniprot/P56814 P56814]
+
** [http://www.uniprot.org/uniprot/Q58092 Q58092]
−
** [http://www.uniprot.org/uniprot/Q58509 Q58509]
+
** [http://www.uniprot.org/uniprot/P45694 P45694]
−
** [http://www.uniprot.org/uniprot/O28533 O28533]
+
** [http://www.uniprot.org/uniprot/Q52723 Q52723]
−
** [http://www.uniprot.org/uniprot/Q9CGM8 Q9CGM8]
+
** [http://www.uniprot.org/uniprot/Q9Z475 Q9Z475]
−
** [http://www.uniprot.org/uniprot/P25972 P25972]
+
** [http://www.uniprot.org/uniprot/P34736 P34736]
−
** [http://www.uniprot.org/uniprot/O27888 O27888]
+
** [http://www.uniprot.org/uniprot/P33315 P33315]
−
** [http://www.uniprot.org/uniprot/P65915 P65915]
+
** [http://www.uniprot.org/uniprot/Q42675 Q42675]
−
** [http://www.uniprot.org/uniprot/P46534 P46534]
+
** [http://www.uniprot.org/uniprot/Q42676 Q42676]
−
** [http://www.uniprot.org/uniprot/P43855 P43855]
+
** [http://www.uniprot.org/uniprot/Q42677 Q42677]
−
** [http://www.uniprot.org/uniprot/P31754 P31754]
+
** [http://www.uniprot.org/uniprot/P46708 P46708]
−
** [http://www.uniprot.org/uniprot/P18904 P18904]
+
** [http://www.uniprot.org/uniprot/P75611 P75611]
−
** [http://www.uniprot.org/uniprot/Q01637 Q01637]
+
** [http://www.uniprot.org/uniprot/P73282 P73282]
−
** [http://www.uniprot.org/uniprot/P09556 P09556]
+
** [http://www.uniprot.org/uniprot/Q49047 Q49047]
−
** [http://www.uniprot.org/uniprot/P21846 P21846]
+
** [http://www.uniprot.org/uniprot/O20250 O20250]
−
** [http://www.uniprot.org/uniprot/P35788 P35788]
+
** [http://www.uniprot.org/uniprot/O78327 O78327]
−
** [http://www.uniprot.org/uniprot/P08870 P08870]
+
** [http://www.uniprot.org/uniprot/Q9URM2 Q9URM2]
−
** [http://www.uniprot.org/uniprot/Q18516 Q18516]
+
** [http://www.uniprot.org/uniprot/Q9RFB7 Q9RFB7]
−
** [http://www.uniprot.org/uniprot/Q45918 Q45918]
+
** [http://www.uniprot.org/uniprot/P23254 P23254]
−
** [http://www.uniprot.org/uniprot/Q42586 Q42586]
+
** [http://www.uniprot.org/uniprot/P27302 P27302]
−
** [http://www.uniprot.org/uniprot/P41923 P41923]
+
** [http://www.uniprot.org/uniprot/P29277 P29277]
−
** [http://www.uniprot.org/uniprot/Q55574 Q55574]
+
** [http://www.uniprot.org/uniprot/P22976 P22976]
−
** [http://www.uniprot.org/uniprot/Q42942 Q42942]
 
−
** [http://www.uniprot.org/uniprot/O76139 O76139]
 
−
** [http://www.uniprot.org/uniprot/O61790 O61790]
 
−
** [http://www.uniprot.org/uniprot/Q9X8R7 Q9X8R7]
 
−
** [http://www.uniprot.org/uniprot/O94331 O94331]
 
−
** [http://www.uniprot.org/uniprot/P30402 P30402]
 
−
** [http://www.uniprot.org/uniprot/P13298 P13298]
 
−
** [http://www.uniprot.org/uniprot/P0A7E3 P0A7E3]
 
 
</div>
 
</div>
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=orotate phosphoribosyltransferase}}
+
{{#set: common-name=transketolase}}
−
{{#set: ec-number=ec-2.4.2.10}}
+
{{#set: ec-number=ec-2.2.1.1}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=7}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:34, 5 January 2021

Reaction 1TRANSKETO-RXN

  • direction:
    • reversible
  • common-name:
    • transketolase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P124-PWY, Bifidobacterium shunt:
    • 12 reactions found over 15 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle:
    • 12 reactions found over 13 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle):
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (assimilatory RuMP Cycle):
    • 7 reactions found over 9 reactions in the full pathway
  • P21-PWY, pentose phosphate pathway (partial):
    • 3 reactions found over 3 reactions in the full pathway
  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch):
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-5723, Rubisco shunt:
    • 10 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-15067&oldid=76430"