Difference between revisions of "RXN-15089"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ExchangeSeed-THIAMINE ExchangeSeed-THIAMINE] == * direction: ** reversible == Reaction formula == *...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FARNESYLTRANSTRANSFERASE-RXN FARNESYLTRANSTRANSFERASE-RXN] == * direction: ** left-to-right * commo...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FARNESYLTRANSTRANSFERASE-RXN FARNESYLTRANSTRANSFERASE-RXN] == |
* direction: | * direction: | ||
− | ** | + | ** left-to-right |
+ | * common-name: | ||
+ | ** farnesyltranstransferase | ||
+ | ** geranylgeranyl diphosphate synthase | ||
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/2.5.1.29 ec-2.5.1.29] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 | + | * 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[FARNESYL-PP]][c] '''=>''' 1 [[GERANYLGERANYL-PP]][c] '''+''' 1 [[PPI]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * Gene: [[SJ13532]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ10781]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ17982]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ20033]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ02885]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ10346]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY-7492]], paspaline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7492 PWY-7492] | ||
+ | ** '''1''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-6659]], fusicoccin A biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6659 PWY-6659] | ||
+ | ** '''1''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-7517]], brassicicene C biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7517 PWY-7517] | ||
+ | ** '''1''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-6691]], plaunotol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6691 PWY-6691] | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-7721]], methyl phomopsenoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7721 PWY-7721] | ||
+ | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736] | ||
+ | ** '''3''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-5120]], geranylgeranyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5120 PWY-5120] | ||
+ | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
+ | * [[PWY-7720]], ophiobolin F biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7720 PWY-7720] | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * category: [[ | + | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a |
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
− | {{#set: direction= | + | * RHEA: |
− | {{#set: nb gene associated= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17654 17654] |
− | {{#set: nb pathway associated= | + | * LIGAND-RXN: |
− | {{#set: reconstruction category= | + | ** [http://www.genome.jp/dbget-bin/www_bget?R02061 R02061] |
− | {{#set: reconstruction tool= | + | * UNIPROT: |
− | {{#set: reconstruction comment= | + | ** [http://www.uniprot.org/uniprot/P39464 P39464] |
− | {{#set: reconstruction source= | + | ** [http://www.uniprot.org/uniprot/P24322 P24322] |
+ | ** [http://www.uniprot.org/uniprot/P80042 P80042] | ||
+ | ** [http://www.uniprot.org/uniprot/Q12051 Q12051] | ||
+ | ** [http://www.uniprot.org/uniprot/P95999 P95999] | ||
+ | ** [http://www.uniprot.org/uniprot/P48368 P48368] | ||
+ | ** [http://www.uniprot.org/uniprot/P93227 P93227] | ||
+ | ** [http://www.uniprot.org/uniprot/P93228 P93228] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42698 Q42698] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43133 Q43133] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42866 Q42866] | ||
+ | ** [http://www.uniprot.org/uniprot/P54976 P54976] | ||
+ | {{#set: direction=left-to-right}} | ||
+ | {{#set: common-name=geranylgeranyl diphosphate synthase|farnesyltranstransferase}} | ||
+ | {{#set: ec-number=ec-2.5.1.29}} | ||
+ | {{#set: nb gene associated=6}} | ||
+ | {{#set: nb pathway associated=8}} | ||
+ | {{#set: reconstruction category=annotation|orthology}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
+ | {{#set: reconstruction comment=n.a}} | ||
+ | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}} |
Revision as of 09:31, 27 August 2019
Contents
Reaction FARNESYLTRANSTRANSFERASE-RXN
- direction:
- left-to-right
- common-name:
- farnesyltranstransferase
- geranylgeranyl diphosphate synthase
- ec-number:
Reaction formula
- 1 DELTA3-ISOPENTENYL-PP[c] + 1 FARNESYL-PP[c] => 1 GERANYLGERANYL-PP[c] + 1 PPI[c]
Gene(s) associated with this reaction
- Gene: SJ13532
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ10781
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ17982
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ20033
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ02885
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ10346
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7492, paspaline biosynthesis: PWY-7492
- 1 reactions found over 6 reactions in the full pathway
- PWY-6659, fusicoccin A biosynthesis: PWY-6659
- 1 reactions found over 8 reactions in the full pathway
- PWY-7517, brassicicene C biosynthesis: PWY-7517
- 1 reactions found over 7 reactions in the full pathway
- PWY-6691, plaunotol biosynthesis: PWY-6691
- 1 reactions found over 3 reactions in the full pathway
- PWY-7721, methyl phomopsenoate biosynthesis: PWY-7721
- 2 reactions found over 4 reactions in the full pathway
- PWY-7736, stellatic acid biosynthesis: PWY-7736
- 3 reactions found over 8 reactions in the full pathway
- PWY-5120, geranylgeranyl diphosphate biosynthesis: PWY-5120
- 1 reactions found over 1 reactions in the full pathway
- PWY-7720, ophiobolin F biosynthesis: PWY-7720
- 1 reactions found over 3 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: