Difference between revisions of "RXN-15115"
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(Created page with "Category:reaction == Reaction RXN-12478 == * direction: ** left-to-right * common-name: ** cytidine4 in trnagly(gcc) 2'-o-methyltransferase * ec-number: ** [http://enzyme....") |
(Created page with "Category:reaction == Reaction RXN-14271 == * direction: ** reversible * common-name: ** (s)-3-hydroxypalmitoyl-coa oxidoreductase ** long-chain-3-hydroxyacyl-coa dehydroge...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN- | + | == Reaction RXN-14271 == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** (s)-3-hydroxypalmitoyl-coa oxidoreductase |
+ | ** long-chain-3-hydroxyacyl-coa dehydrogenase | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/1.1.1.211 ec-1.1.1.211] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[CPD0-2232]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[3-OXOPALMITOYL-COA]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ21390]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ07211]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ03584]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ16470]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-7656]], Spodoptera littoralis pheromone biosynthesis: |
− | ** ''' | + | ** '''4''' reactions found over '''22''' reactions in the full pathway |
+ | * [[PWY-7654]], (8E,10E)-dodeca-8,10-dienol biosynthesis: | ||
+ | ** '''5''' reactions found over '''11''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31160 31160] |
− | {{#set: direction= | + | * LIGAND-RXN: |
− | {{#set: common-name= | + | ** [http://www.genome.jp/dbget-bin/www_bget?R04737 R04737] |
− | {{#set: ec-number=ec- | + | {{#set: direction=reversible}} |
− | {{#set: nb gene associated= | + | {{#set: common-name=long-chain-3-hydroxyacyl-coa dehydrogenase|(s)-3-hydroxypalmitoyl-coa oxidoreductase}} |
− | {{#set: nb pathway associated= | + | {{#set: ec-number=ec-1.1.1.211}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: nb gene associated=4}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: nb pathway associated=2}} |
+ | {{#set: reconstruction category=annotation|orthology}} | ||
+ | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 15:32, 5 January 2021
Contents
Reaction RXN-14271
- direction:
- reversible
- common-name:
- (s)-3-hydroxypalmitoyl-coa oxidoreductase
- long-chain-3-hydroxyacyl-coa dehydrogenase
- ec-number:
Reaction formula
- 1 CPD0-2232[c] + 1 NAD[c] <=> 1 3-OXOPALMITOYL-COA[c] + 1 NADH[c] + 1 PROTON[c]
Gene(s) associated with this reaction
- Gene: SJ21390
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ07211
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ03584
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ16470
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7656, Spodoptera littoralis pheromone biosynthesis:
- 4 reactions found over 22 reactions in the full pathway
- PWY-7654, (8E,10E)-dodeca-8,10-dienol biosynthesis:
- 5 reactions found over 11 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links