Difference between revisions of "RXN-15122"

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(Created page with "Category:reaction == Reaction 3.2.1.21-RXN == * direction: ** left-to-right * common-name: ** beta-glucosidase ** β-d-glucoside glucohydrolase * ec-number: ** [http:/...")
(Created page with "Category:reaction == Reaction RXN-15122 == * direction: ** reversible * common-name: ** threonine deaminase == Reaction formula == * 1 THR[c] '''<=>''' 1 CPD-15056...")
 
(4 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.2.1.21-RXN ==
+
== Reaction RXN-15122 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** beta-glucosidase
+
** threonine deaminase
−
** &beta;-d-glucoside glucohydrolase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/3.2.1.21 ec-3.2.1.21]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Beta-D-glucosides]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Glucopyranose]][c] '''+''' 1 [[Non-Glucosylated-Glucose-Acceptors]][c]
+
* 1 [[THR]][c] '''<=>''' 1 [[CPD-15056]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ08066]]
−
* Gene: [[SJ16402]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05740]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19930]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ00855]]
+
* Gene: [[SJ10955]]
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14193]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05533]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ17199]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ05257]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18897]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05782]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05532]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04559]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ04558]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ14973]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18318]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05741]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ11958]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5437]], L-threonine degradation I:
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5826]], hypoglycin biosynthesis:
 +
** '''2''' reactions found over '''14''' reactions in the full pathway
 +
* [[ILEUSYN-PWY]], L-isoleucine biosynthesis I (from threonine):
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR119155
−
* UNIPROT:
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/P29091 P29091]
+
{{#set: common-name=threonine deaminase}}
−
** [http://www.uniprot.org/uniprot/P29090 P29090]
+
{{#set: nb gene associated=2}}
−
** [http://www.uniprot.org/uniprot/P27034 P27034]
+
{{#set: nb pathway associated=3}}
−
** [http://www.uniprot.org/uniprot/P16084 P16084]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/Q03506 Q03506]
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q23892 Q23892]
 
−
** [http://www.uniprot.org/uniprot/Q9CFI7 Q9CFI7]
 
−
** [http://www.uniprot.org/uniprot/P22507 P22507]
 
−
** [http://www.uniprot.org/uniprot/P33363 P33363]
 
−
** [http://www.uniprot.org/uniprot/Q9WXN2 Q9WXN2]
 
−
** [http://www.uniprot.org/uniprot/Q9CFL0 Q9CFL0]
 
−
** [http://www.uniprot.org/uniprot/Q9CJ31 Q9CJ31]
 
−
** [http://www.uniprot.org/uniprot/P12614 P12614]
 
−
** [http://www.uniprot.org/uniprot/P06835 P06835]
 
−
** [http://www.uniprot.org/uniprot/P26205 P26205]
 
−
** [http://www.uniprot.org/uniprot/P26204 P26204]
 
−
** [http://www.uniprot.org/uniprot/P07337 P07337]
 
−
** [http://www.uniprot.org/uniprot/Q8X8G6 Q8X8G6]
 
−
** [http://www.uniprot.org/uniprot/Q12653 Q12653]
 
−
** [http://www.uniprot.org/uniprot/P48825 P48825]
 
−
** [http://www.uniprot.org/uniprot/P94248 P94248]
 
−
** [http://www.uniprot.org/uniprot/O24749 O24749]
 
−
** [http://www.uniprot.org/uniprot/Q9SPK3 Q9SPK3]
 
−
** [http://www.uniprot.org/uniprot/P22073 P22073]
 
−
** [http://www.uniprot.org/uniprot/P22505 P22505]
 
−
** [http://www.uniprot.org/uniprot/P96316 P96316]
 
−
** [http://www.uniprot.org/uniprot/P10482 P10482]
 
−
** [http://www.uniprot.org/uniprot/P14002 P14002]
 
−
** [http://www.uniprot.org/uniprot/P15885 P15885]
 
−
** [http://www.uniprot.org/uniprot/P26208 P26208]
 
−
** [http://www.uniprot.org/uniprot/Q41172 Q41172]
 
−
** [http://www.uniprot.org/uniprot/Q7M0Q7 Q7M0Q7]
 
−
** [http://www.uniprot.org/uniprot/Q08638 Q08638]
 
−
** [http://www.uniprot.org/uniprot/Q9S9H4 Q9S9H4]
 
−
** [http://www.uniprot.org/uniprot/Q59976 Q59976]
 
−
** [http://www.uniprot.org/uniprot/Q59437 Q59437]
 
−
** [http://www.uniprot.org/uniprot/Q42618 Q42618]
 
−
** [http://www.uniprot.org/uniprot/Q42975 Q42975]
 
−
** [http://www.uniprot.org/uniprot/Q40984 Q40984]
 
−
** [http://www.uniprot.org/uniprot/Q43073 Q43073]
 
−
** [http://www.uniprot.org/uniprot/O82074 O82074]
 
−
** [http://www.uniprot.org/uniprot/O24524 O24524]
 
−
** [http://www.uniprot.org/uniprot/Q8CJM3 Q8CJM3]
 
−
** [http://www.uniprot.org/uniprot/Q9X9R4 Q9X9R4]
 
−
** [http://www.uniprot.org/uniprot/O68843 O68843]
 
−
** [http://www.uniprot.org/uniprot/O82772 O82772]
 
−
** [http://www.uniprot.org/uniprot/O49117 O49117]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=beta-glucosidase|&beta;-d-glucoside glucohydrolase}}
 
−
{{#set: ec-number=ec-3.2.1.21}}
 
−
{{#set: nb gene associated=17}}
 
−
{{#set: nb pathway associated=0}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction RXN-15122

  • direction:
    • reversible
  • common-name:
    • threonine deaminase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5437, L-threonine degradation I:
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-5826, hypoglycin biosynthesis:
    • 2 reactions found over 14 reactions in the full pathway
  • ILEUSYN-PWY, L-isoleucine biosynthesis I (from threonine):
    • 4 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR119155





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