Difference between revisions of "RXN-15122"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTIDINE-AMMONIA-LYASE-RXN HISTIDINE-AMMONIA-LYASE-RXN] == * direction: ** left-to-right * ec-numb...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12583 RXN-12583] == * direction: ** left-to-right * common-name: ** pyruvate:thiamin diphosphat...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTIDINE-AMMONIA-LYASE-RXN HISTIDINE-AMMONIA-LYASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12583 RXN-12583] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* ec-number:
+
* common-name:
−
** [http://enzyme.expasy.org/EC/4.3.1.3 ec-4.3.1.3]
+
** pyruvate:thiamin diphosphate acetaldehydetransferase (decarboxylating)
 +
** pyruvate dehydrogenase (nad+)
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[HIS]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[UROCANATE]][c]
+
* 1 [[PROTON]][c] '''+''' 1 [[PYRUVATE]][c] '''+''' 1 [[THIAMINE-PYROPHOSPHATE]][c] '''=>''' 1 [[2-ALPHA-HYDROXYETHYL-THPP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07221]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ00971]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ01042]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ14925]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ19470]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ09312]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[HISDEG-PWY]], L-histidine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=HISDEG-PWY HISDEG-PWY]
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5028]], L-histidine degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5028 PWY-5028]
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5030]], L-histidine degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5030 PWY-5030]
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[HISHP-PWY]], L-histidine degradation VI: [http://metacyc.org/META/NEW-IMAGE?object=HISHP-PWY HISHP-PWY]
 
−
** '''1''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21233 21233]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01168 R01168]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00014 R00014]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P21310 P21310]
 
−
** [http://www.uniprot.org/uniprot/P21213 P21213]
 
−
** [http://www.uniprot.org/uniprot/P35492 P35492]
 
−
** [http://www.uniprot.org/uniprot/Q9RZ06 Q9RZ06]
 
−
** [http://www.uniprot.org/uniprot/P24221 P24221]
 
−
** [http://www.uniprot.org/uniprot/P42357 P42357]
 
−
** [http://www.uniprot.org/uniprot/Q20502 Q20502]
 
−
** [http://www.uniprot.org/uniprot/P10944 P10944]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-4.3.1.3}}
+
{{#set: common-name=pyruvate:thiamin diphosphate acetaldehydetransferase (decarboxylating)|pyruvate dehydrogenase (nad+)}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 14:28, 26 August 2019

Reaction RXN-12583

  • direction:
    • left-to-right
  • common-name:
    • pyruvate:thiamin diphosphate acetaldehydetransferase (decarboxylating)
    • pyruvate dehydrogenase (nad+)

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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