Difference between revisions of "RXN-15129"
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(Created page with "Category:reaction == Reaction NPHS == * direction: ** left-to-right * common-name: ** naphthoate synthase == Reaction formula == * 1.0 CO-A[c] '''+''' 1.0 DIHYDROXYN...") |
(Created page with "Category:reaction == Reaction RXN-8991 == * direction: ** reversible * common-name: ** 3-isopropylmalate dehydratase ** (2r,3s)-3-isopropylmalate hydro-lyase (2-isopropylm...") |
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| Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction | + | == Reaction RXN-8991 == |
* direction: | * direction: | ||
| − | ** | + | ** reversible |
* common-name: | * common-name: | ||
| − | ** | + | ** 3-isopropylmalate dehydratase |
| + | ** (2r,3s)-3-isopropylmalate hydro-lyase (2-isopropylmaleate-forming) | ||
| + | * synonymous: | ||
| + | ** α-isopropylmalate isomerase | ||
| + | ** 3-isopropylmalate hydro-lyase | ||
| + | ** (2r,3s)-3-isopropylmalate hydro-lyase | ||
| + | ** β-isopropylmalate dehydratase | ||
== Reaction formula == | == Reaction formula == | ||
| − | * 1 | + | * 1 [[2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE]][c] '''<=>''' 1 [[CPD-9451]][c] '''+''' 1 [[WATER]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ22396]] |
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
| − | *** Source: [[ | + | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
| + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | * Gene: [[SJ09771]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| + | * [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): | ||
| + | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
| + | * [[LEUSYN-PWY]], L-leucine biosynthesis: | ||
| + | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| − | * category: [[orthology]]; source: [[ | + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
| + | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
| − | {{#set: direction= | + | * RHEA: |
| − | {{#set: common-name= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10676 10676] |
| − | {{#set: nb gene associated= | + | * LIGAND-RXN: |
| − | {{#set: nb pathway associated= | + | ** [http://www.genome.jp/dbget-bin/www_bget?R04001 R04001] |
| − | {{#set: reconstruction category=orthology}} | + | {{#set: direction=reversible}} |
| − | {{#set: reconstruction tool=pantograph}} | + | {{#set: common-name=(2r,3s)-3-isopropylmalate hydro-lyase (2-isopropylmaleate-forming)|3-isopropylmalate dehydratase}} |
| + | {{#set: synonymous=α-isopropylmalate isomerase|3-isopropylmalate hydro-lyase|(2r,3s)-3-isopropylmalate hydro-lyase|β-isopropylmalate dehydratase}} | ||
| + | {{#set: nb gene associated=2}} | ||
| + | {{#set: nb pathway associated=2}} | ||
| + | {{#set: reconstruction category=annotation|orthology}} | ||
| + | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source= | + | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 11:24, 15 January 2021
Contents
Reaction RXN-8991
- direction:
- reversible
- common-name:
- 3-isopropylmalate dehydratase
- (2r,3s)-3-isopropylmalate hydro-lyase (2-isopropylmaleate-forming)
- synonymous:
- α-isopropylmalate isomerase
- 3-isopropylmalate hydro-lyase
- (2r,3s)-3-isopropylmalate hydro-lyase
- β-isopropylmalate dehydratase
Reaction formula
- 1 2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE[c] <=> 1 CPD-9451[c] + 1 WATER[c]
Gene(s) associated with this reaction
- Gene: SJ22396
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ09771
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-6871, 3-methylbutanol biosynthesis (engineered):
- 5 reactions found over 7 reactions in the full pathway
- LEUSYN-PWY, L-leucine biosynthesis:
- 5 reactions found over 6 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links
