Difference between revisions of "RXN-15129"

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(Created page with "Category:reaction == Reaction RXN-8991 == * direction: ** reversible * common-name: ** 3-isopropylmalate dehydratase ** (2r,3s)-3-isopropylmalate hydro-lyase (2-isopropylm...")
(Created page with "Category:reaction == Reaction RXN-1401 == * direction: ** left-to-right * common-name: ** tryptamine oxidase * ec-number: ** [http://enzyme.expasy.org/EC/1.4.3.4 ec-1.4.3....")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-8991 ==
+
== Reaction RXN-1401 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-isopropylmalate dehydratase
+
** tryptamine oxidase
−
** (2r,3s)-3-isopropylmalate hydro-lyase (2-isopropylmaleate-forming)
+
* ec-number:
−
* synonymous:
+
** [http://enzyme.expasy.org/EC/1.4.3.4 ec-1.4.3.4]
−
** α-isopropylmalate isomerase
 
−
** 3-isopropylmalate hydro-lyase
 
−
** (2r,3s)-3-isopropylmalate hydro-lyase
 
−
** β-isopropylmalate dehydratase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE]][c] '''<=>''' 1 [[CPD-9451]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[TRYPTAMINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[INDOLE_ACETALDEHYDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ22396]]
+
* Gene: [[SJ07831]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ09771]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered):
+
* [[PWY-6307]], L-tryptophan degradation X (mammalian, via tryptamine):
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[LEUSYN-PWY]], L-leucine biosynthesis:
+
* [[PWY-3181]], L-tryptophan degradation VI (via tryptamine):
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR104952
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10676 10676]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04001 R04001]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02173 R02173]
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: common-name=(2r,3s)-3-isopropylmalate hydro-lyase (2-isopropylmaleate-forming)|3-isopropylmalate dehydratase}}
+
{{#set: common-name=tryptamine oxidase}}
−
{{#set: synonymous=&alpha;-isopropylmalate isomerase|3-isopropylmalate hydro-lyase|(2r,3s)-3-isopropylmalate hydro-lyase|&beta;-isopropylmalate dehydratase}}
+
{{#set: ec-number=ec-1.4.3.4}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=2}}
 
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 08:37, 15 March 2021

Reaction RXN-1401

  • direction:
    • left-to-right
  • common-name:
    • tryptamine oxidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6307, L-tryptophan degradation X (mammalian, via tryptamine):
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-3181, L-tryptophan degradation VI (via tryptamine):
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR104952
  • LIGAND-RXN:





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