Difference between revisions of "RXN-15133"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTIDINE-DECARBOXYLASE-RXN HISTIDINE-DECARBOXYLASE-RXN] == * direction: ** left-to-right * common-...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AMINO-CARBOXYMUCONATE-SEMIALDEHYDE-RXN AMINO-CARBOXYMUCONATE-SEMIALDEHYDE-RXN] == * direction: ** l...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTIDINE-DECARBOXYLASE-RXN HISTIDINE-DECARBOXYLASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AMINO-CARBOXYMUCONATE-SEMIALDEHYDE-RXN AMINO-CARBOXYMUCONATE-SEMIALDEHYDE-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** histidine decarboxylase
+
** 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.1.22 ec-4.1.1.22]
+
** [http://enzyme.expasy.org/EC/4.1.1.45 ec-4.1.1.45]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[HIS]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[HISTAMINE]][c]
+
* 1 [[2-AMINO-3-3-OXOPROP-2-ENYL-BUT-2-ENEDI]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[2-AMINOMUCONATE_SEMIALDEHYDE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ02880]]
−
* Gene: [[SJ05388]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18752]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18746]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18751]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08395]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ09232]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ09099]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6173]], histamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6173 PWY-6173]
+
* [[PWY-5654]], 2-amino-3-carboxymuconate semialdehyde degradation to 2-hydroxypentadienoate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5654 PWY-5654]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5652]], 2-amino-3-carboxymuconate semialdehyde degradation to glutaryl-CoA: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5652 PWY-5652]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5647]], 2-nitrobenzoate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5647 PWY-5647]
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20841 20841]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16558 16558]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01167 R01167]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04323 R04323]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P05034 P05034]
 
−
** [http://www.uniprot.org/uniprot/P16453 P16453]
 
−
** [http://www.uniprot.org/uniprot/P28577 P28577]
 
−
** [http://www.uniprot.org/uniprot/P19113 P19113]
 
−
** [http://www.uniprot.org/uniprot/P28578 P28578]
 
−
** [http://www.uniprot.org/uniprot/P04194 P04194]
 
−
** [http://www.uniprot.org/uniprot/P04193 P04193]
 
−
** [http://www.uniprot.org/uniprot/P00862 P00862]
 
−
** [http://www.uniprot.org/uniprot/Q7M174 Q7M174]
 
−
** [http://www.uniprot.org/uniprot/P23738 P23738]
 
−
** [http://www.uniprot.org/uniprot/Q05733 Q05733]
 
−
** [http://www.uniprot.org/uniprot/P54772 P54772]
 
−
** [http://www.uniprot.org/uniprot/Q56581 Q56581]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=histidine decarboxylase}}
+
{{#set: common-name=2-amino-3-carboxymuconate-6-semialdehyde decarboxylase}}
−
{{#set: ec-number=ec-4.1.1.22}}
+
{{#set: ec-number=ec-4.1.1.45}}
−
{{#set: nb gene associated=7}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 14:26, 26 August 2019

Reaction AMINO-CARBOXYMUCONATE-SEMIALDEHYDE-RXN

  • direction:
    • left-to-right
  • common-name:
    • 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5654, 2-amino-3-carboxymuconate semialdehyde degradation to 2-hydroxypentadienoate: PWY-5654
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-5652, 2-amino-3-carboxymuconate semialdehyde degradation to glutaryl-CoA: PWY-5652
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-5647, 2-nitrobenzoate degradation I: PWY-5647
    • 2 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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