Difference between revisions of "RXN-15137"

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(Created page with "Category:reaction == Reaction 2.4.1.224-RXN == * direction: ** left-to-right * common-name: ** n-acetylglucosaminyl-proteoglycan 4-β-glucuronosyltransferase * ec-numb...")
(Created page with "Category:reaction == Reaction RXN1G-220 == * direction: ** left-to-right * common-name: ** cis,cis-delta17,35-3-hydroxyc54:2-[acyl-carrier protein] dehydratase ** 3-cis,ci...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
== Reaction 2.4.1.224-RXN ==
+
== Reaction RXN1G-220 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** n-acetylglucosaminyl-proteoglycan 4-β-glucuronosyltransferase
+
** cis,cis-delta17,35-3-hydroxyc54:2-[acyl-carrier protein] dehydratase
 +
** 3-cis,cis-delta17,35-3-hydroxyc54:2-[acyl-carrier protein] dehydratase
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/2.4.1.224 ec-2.4.1.224]
+
** [http://enzyme.expasy.org/EC/4.2.1.m2 ec-4.2.1.m2]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Protein]][c] '''+''' 1 [[UDP-N-ACETYL-D-GLUCOSAMINE]][c] '''=>''' 1 [[GlcNAc-GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Core]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[UDP]][c]
+
* 1 [[cis-cis-D17-35-3-hydroxyC54-2-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[trans-D2-cis-cis-D17-35-C54-3-ACPs]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ10275]]
* Gene: [[SJ14184]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[SJ01052]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ08295]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ07780]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ08296]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ14192]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ11522]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ08300]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-6558]], heparan sulfate biosynthesis (late stages):
+
* [[PWYG-321]], mycolate biosynthesis:
** '''7''' reactions found over '''13''' reactions in the full pathway
+
** '''26''' reactions found over '''182''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16214 16214]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R07334 R07334]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=n-acetylglucosaminyl-proteoglycan 4-&beta;-glucuronosyltransferase}}
+
{{#set: common-name=3-cis,cis-delta17,35-3-hydroxyc54:2-[acyl-carrier protein] dehydratase|cis,cis-delta17,35-3-hydroxyc54:2-[acyl-carrier protein] dehydratase}}
{{#set: ec-number=ec-2.4.1.224}}
+
{{#set: ec-number=ec-4.2.1.m2}}
{{#set: nb gene associated=8}}
+
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}

Revision as of 11:23, 15 January 2021

Reaction RXN1G-220

  • direction:
    • left-to-right
  • common-name:
    • cis,cis-delta17,35-3-hydroxyc54:2-[acyl-carrier protein] dehydratase
    • 3-cis,cis-delta17,35-3-hydroxyc54:2-[acyl-carrier protein] dehydratase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWYG-321, mycolate biosynthesis:
    • 26 reactions found over 182 reactions in the full pathway

Reconstruction information

External links

  • Property "Common-name" (as page type) with input value "3-cis,cis-delta17,35-3-hydroxyc54:2-[acyl-carrier protein] dehydratase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Common-name" (as page type) with input value "cis,cis-delta17,35-3-hydroxyc54:2-[acyl-carrier protein] dehydratase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.