Difference between revisions of "RXN-15212"

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(Created page with "Category:reaction == Reaction 1.1.1.271-RXN == * direction: ** left-to-right * common-name: ** gdp-fucose synthase * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.271 e...")
(Created page with "Category:reaction == Reaction RXN-15212 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/3.1.4.12 ec-3.1.4.12] == Reaction formula == * 1 N-...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 1.1.1.271-RXN ==
+
== Reaction RXN-15212 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** gdp-fucose synthase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.271 ec-1.1.1.271]
+
** [http://enzyme.expasy.org/EC/3.1.4.12 ec-3.1.4.12]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-13118]][c] '''+''' 1 [[NADP]][c]
+
* 1 [[N-acyl-sphingosylphosphorylcholine]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[N-Acylsphingosine]][c] '''+''' 1 [[PHOSPHORYL-CHOLINE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ05880]]
+
* Gene: [[SJ16608]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ16609]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-66]], GDP-L-fucose biosynthesis I (from GDP-D-mannose):
+
* [[PWY3DJ-11281]], sphingomyelin metabolism:
 
** '''2''' reactions found over '''3''' reactions in the full pathway
 
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7277]], sphingolipid biosynthesis (mammals):
 +
** '''4''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR100108
+
* METANETX-RXN : MNXR119218
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18887 18887]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R05692 R05692]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=gdp-fucose synthase}}
+
{{#set: ec-number=ec-3.1.4.12}}
−
{{#set: ec-number=ec-1.1.1.271}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb pathway associated=2}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction RXN-15212

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY3DJ-11281, sphingomyelin metabolism:
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7277, sphingolipid biosynthesis (mammals):
    • 4 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR119218





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