Difference between revisions of "RXN-15378"

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(Created page with "Category:reaction == Reaction RXN-8661 == * direction: ** left-to-right * common-name: ** [histone-h3]-lysine-36 demethylase ** histone demethylase activity (h3-k36 specif...")
(Created page with "Category:reaction == Reaction 2.3.1.45-RXN == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.45 ec-2.3.1.45] == Reaction formula == * 1 AC...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-8661 ==
+
== Reaction 2.3.1.45-RXN ==
 
* direction:
 
* direction:
** left-to-right
+
** reversible
* common-name:
 
** [histone-h3]-lysine-36 demethylase
 
** histone demethylase activity (h3-k36 specific)
 
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/1.14.11 ec-1.14.11]
+
** [http://enzyme.expasy.org/EC/2.3.1.45 ec-2.3.1.45]
* synonymous:
 
** h3-k36-specific demethylase
 
** jmjc domain-containing histone demethylase 1a
 
** histone demethylase
 
** histone-lysine (h3-k36) demethylase
 
** jhdm1a
 
** protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD-8901]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[FORMALDEHYDE]][c] '''+''' 1 [[Protein-L-lysine]][c] '''+''' 1 [[SUC]][c]
+
* 1 [[ACETYL-COA]][c] '''+''' 1 [[N-ACETYLNEURAMINATE]][c] '''<=>''' 1 [[CO-A]][c] '''+''' 1 [[CPD-1803]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ18735]]
+
* Gene: [[SJ06016]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[SJ05371]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ19102]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ00708]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ13421]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ19354]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
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== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10785 10785]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20808 20808]
{{#set: direction=left-to-right}}
+
* LIGAND-RXN:
{{#set: common-name=[histone-h3]-lysine-36 demethylase|histone demethylase activity (h3-k36 specific)}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01807 R01807]
{{#set: ec-number=ec-1.14.11}}
+
{{#set: direction=reversible}}
{{#set: synonymous=histone demethylase|protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase|jmjc domain-containing histone demethylase 1a|h3-k36-specific demethylase|histone-lysine (h3-k36) demethylase|jhdm1a}}
+
{{#set: ec-number=ec-2.3.1.45}}
{{#set: nb gene associated=6}}
+
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=0}}
 
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}

Revision as of 15:02, 5 January 2021

Reaction 2.3.1.45-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links