Difference between revisions of "RXN-15511"

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(Created page with "Category:reaction == Reaction ADCLY-RXN == * direction: ** reversible * common-name: ** aminodeoxychorismate lyase * ec-number: ** [http://enzyme.expasy.org/EC/4.1.3.38 ec...")
(Created page with "Category:reaction == Reaction GLUTDEHYD-RXN == * direction: ** reversible * common-name: ** glutamate dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.4.1.4 ec...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ADCLY-RXN ==
+
== Reaction GLUTDEHYD-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** aminodeoxychorismate lyase
+
** glutamate dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.3.38 ec-4.1.3.38]
+
** [http://enzyme.expasy.org/EC/1.4.1.4 ec-1.4.1.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[4-AMINO-4-DEOXYCHORISMATE]][c] '''<=>''' 1 [[P-AMINO-BENZOATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1 [[GLT]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ13018]]
+
* Gene: [[SJ10621]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20190]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ10812]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ10813]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ20174]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6543]], 4-aminobenzoate biosynthesis:
+
* [[GLUTSYNIII-PWY]], L-glutamate biosynthesis III:
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-5675]], nitrate reduction V (assimilatory):
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY490-3]], nitrate reduction VI (assimilatory):
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16204 16204]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11615 11615]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05553 R05553]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00248 R00248]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P07262 P07262]
 +
** [http://www.uniprot.org/uniprot/P15111 P15111]
 +
** [http://www.uniprot.org/uniprot/P28724 P28724]
 +
** [http://www.uniprot.org/uniprot/P43793 P43793]
 +
** [http://www.uniprot.org/uniprot/Q9JT56 Q9JT56]
 +
** [http://www.uniprot.org/uniprot/P00370 P00370]
 +
** [http://www.uniprot.org/uniprot/P00369 P00369]
 +
** [http://www.uniprot.org/uniprot/P29507 P29507]
 +
** [http://www.uniprot.org/uniprot/P28998 P28998]
 +
** [http://www.uniprot.org/uniprot/P29051 P29051]
 +
** [http://www.uniprot.org/uniprot/P31026 P31026]
 +
** [http://www.uniprot.org/uniprot/P39475 P39475]
 +
** [http://www.uniprot.org/uniprot/P39708 P39708]
 +
** [http://www.uniprot.org/uniprot/P54387 P54387]
 +
** [http://www.uniprot.org/uniprot/P54386 P54386]
 +
** [http://www.uniprot.org/uniprot/P95544 P95544]
 +
** [http://www.uniprot.org/uniprot/P78804 P78804]
 +
</div>
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=aminodeoxychorismate lyase}}
+
{{#set: common-name=glutamate dehydrogenase}}
−
{{#set: ec-number=ec-4.1.3.38}}
+
{{#set: ec-number=ec-1.4.1.4}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=4}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:02, 14 January 2021

Reaction GLUTDEHYD-RXN

  • direction:
    • reversible
  • common-name:
    • glutamate dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLUTSYNIII-PWY, L-glutamate biosynthesis III:
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-5675, nitrate reduction V (assimilatory):
    • 4 reactions found over 4 reactions in the full pathway
  • PWY490-3, nitrate reduction VI (assimilatory):
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs):
    • 10 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





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