Difference between revisions of "RXN-15513"

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(Created page with "Category:reaction == Reaction SULFITE-REDUCTASE-FERREDOXIN-RXN == * direction: ** left-to-right * common-name: ** hydrogen sulfide:ferredoxin oxidoreductase * ec-number: *...")
(Created page with "Category:reaction == Reaction GTP-CYCLOHYDRO-II-RXN == * direction: ** left-to-right * common-name: ** gtp cyclohydrolase ** gtp cyclohydrolase ii * ec-number: ** [http://...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SULFITE-REDUCTASE-FERREDOXIN-RXN ==
+
== Reaction GTP-CYCLOHYDRO-II-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** hydrogen sulfide:ferredoxin oxidoreductase
+
** gtp cyclohydrolase
 +
** gtp cyclohydrolase ii
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.8.7.1 ec-1.8.7.1]
+
** [http://enzyme.expasy.org/EC/3.5.4.25 ec-3.5.4.25]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 8 [[PROTON]][c] '''+''' 6 [[Reduced-ferredoxins]][c] '''+''' 1 [[SO3]][c] '''=>''' 1 [[HS]][c] '''+''' 6 [[Oxidized-ferredoxins]][c] '''+''' 3 [[WATER]][c]
+
* 1 [[GTP]][c] '''+''' 3 [[WATER]][c] '''=>''' 1 [[DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR]][c] '''+''' 1 [[FORMATE]][c] '''+''' 1 [[PPI]][c] '''+''' 2 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ17624]]
+
* Gene: [[SJ17329]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ05001]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[SULFMETII-PWY]], assimilatory sulfate reduction II:
+
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants):
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7539]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia):
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6168]], flavin biosynthesis III (fungi):
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
Line 24: Line 32:
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23134 23134]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23705 23705]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00859 R00859]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00425 R00425]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/O82802 O82802]
+
** [http://www.uniprot.org/uniprot/P0A7I7 P0A7I7]
−
** [http://www.uniprot.org/uniprot/Q42590 Q42590]
+
** [http://www.uniprot.org/uniprot/Q9PNU4 Q9PNU4]
−
** [http://www.uniprot.org/uniprot/P72854 P72854]
+
** [http://www.uniprot.org/uniprot/O08315 O08315]
−
** [http://www.uniprot.org/uniprot/O23813 O23813]
+
** [http://www.uniprot.org/uniprot/O66679 O66679]
−
** [http://www.uniprot.org/uniprot/Q9LZ66 Q9LZ66]
+
** [http://www.uniprot.org/uniprot/Q9PHU4 Q9PHU4]
 +
** [http://www.uniprot.org/uniprot/O25484 O25484]
 +
** [http://www.uniprot.org/uniprot/P0A5V0 P0A5V0]
 +
** [http://www.uniprot.org/uniprot/P0A7I8 P0A7I8]
 +
** [http://www.uniprot.org/uniprot/P43525 P43525]
 +
** [http://www.uniprot.org/uniprot/P17620 P17620]
 +
** [http://www.uniprot.org/uniprot/P38066 P38066]
 +
** [http://www.uniprot.org/uniprot/P50139 P50139]
 +
** [http://www.uniprot.org/uniprot/P74104 P74104]
 +
** [http://www.uniprot.org/uniprot/O24019 O24019]
 +
** [http://www.uniprot.org/uniprot/P51695 P51695]
 +
** [http://www.uniprot.org/uniprot/P50855 P50855]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=hydrogen sulfide:ferredoxin oxidoreductase}}
+
{{#set: common-name=gtp cyclohydrolase ii|gtp cyclohydrolase}}
−
{{#set: ec-number=ec-1.8.7.1}}
+
{{#set: ec-number=ec-3.5.4.25}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:25, 15 January 2021

Reaction GTP-CYCLOHYDRO-II-RXN

  • direction:
    • left-to-right
  • common-name:
    • gtp cyclohydrolase
    • gtp cyclohydrolase ii
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants):
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7539, 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia):
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6168, flavin biosynthesis III (fungi):
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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