Difference between revisions of "RXN-15513"

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(Created page with "Category:reaction == Reaction GTP-CYCLOHYDRO-II-RXN == * direction: ** left-to-right * common-name: ** gtp cyclohydrolase ** gtp cyclohydrolase ii * ec-number: ** [http://...")
(Created page with "Category:reaction == Reaction ASPARAGHYD-RXN == * direction: ** left-to-right * common-name: ** asparaginase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.1.38 ec-3.5.1...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GTP-CYCLOHYDRO-II-RXN ==
+
== Reaction ASPARAGHYD-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** gtp cyclohydrolase
+
** asparaginase
−
** gtp cyclohydrolase ii
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.4.25 ec-3.5.4.25]
+
** [http://enzyme.expasy.org/EC/3.5.1.38 ec-3.5.1.38]
 +
** [http://enzyme.expasy.org/EC/3.5.1.1 ec-3.5.1.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GTP]][c] '''+''' 3 [[WATER]][c] '''=>''' 1 [[DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR]][c] '''+''' 1 [[FORMATE]][c] '''+''' 1 [[PPI]][c] '''+''' 2 [[PROTON]][c]
+
* 1 [[ASN]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[L-ASPARTATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ17329]]
+
* Gene: [[SJ17531]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ05001]]
+
* Gene: [[SJ09511]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants):
+
* [[ASPARAGINE-DEG1-PWY-1]], L-asparagine degradation III (mammalian):
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7539]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia):
+
* [[ASPASN-PWY]], superpathway of L-aspartate and L-asparagine biosynthesis:
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''4''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6168]], flavin biosynthesis III (fungi):
+
* [[ASPARAGINE-DEG1-PWY]], L-asparagine degradation I:
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR96056
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23705 23705]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21017 21017]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00425 R00425]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00485 R00485]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P0A7I7 P0A7I7]
+
** [http://www.uniprot.org/uniprot/P06608 P06608]
−
** [http://www.uniprot.org/uniprot/Q9PNU4 Q9PNU4]
+
** [http://www.uniprot.org/uniprot/P26900 P26900]
−
** [http://www.uniprot.org/uniprot/O08315 O08315]
+
** [http://www.uniprot.org/uniprot/P43843 P43843]
−
** [http://www.uniprot.org/uniprot/O66679 O66679]
+
** [http://www.uniprot.org/uniprot/Q9V262 Q9V262]
−
** [http://www.uniprot.org/uniprot/Q9PHU4 Q9PHU4]
+
** [http://www.uniprot.org/uniprot/Q9JT73 Q9JT73]
−
** [http://www.uniprot.org/uniprot/O25484 O25484]
+
** [http://www.uniprot.org/uniprot/O25424 O25424]
−
** [http://www.uniprot.org/uniprot/P0A5V0 P0A5V0]
+
** [http://www.uniprot.org/uniprot/P37595 P37595]
−
** [http://www.uniprot.org/uniprot/P0A7I8 P0A7I8]
+
** [http://www.uniprot.org/uniprot/Q9ZLB9 Q9ZLB9]
−
** [http://www.uniprot.org/uniprot/P43525 P43525]
+
** [http://www.uniprot.org/uniprot/O34482 O34482]
−
** [http://www.uniprot.org/uniprot/P17620 P17620]
+
** [http://www.uniprot.org/uniprot/Q9V2K1 Q9V2K1]
−
** [http://www.uniprot.org/uniprot/P38066 P38066]
+
** [http://www.uniprot.org/uniprot/O57797 O57797]
−
** [http://www.uniprot.org/uniprot/P50139 P50139]
+
** [http://www.uniprot.org/uniprot/Q9PJ82 Q9PJ82]
−
** [http://www.uniprot.org/uniprot/P74104 P74104]
+
** [http://www.uniprot.org/uniprot/P30363 P30363]
−
** [http://www.uniprot.org/uniprot/O24019 O24019]
+
** [http://www.uniprot.org/uniprot/P30362 P30362]
−
** [http://www.uniprot.org/uniprot/P51695 P51695]
+
** [http://www.uniprot.org/uniprot/P30364 P30364]
−
** [http://www.uniprot.org/uniprot/P50855 P50855]
+
** [http://www.uniprot.org/uniprot/P38986 P38986]
 +
** [http://www.uniprot.org/uniprot/P50287 P50287]
 +
** [http://www.uniprot.org/uniprot/P11163 P11163]
 +
** [http://www.uniprot.org/uniprot/P50286 P50286]
 +
** [http://www.uniprot.org/uniprot/P87015 P87015]
 +
** [http://www.uniprot.org/uniprot/Q9UTS7 Q9UTS7]
 +
** [http://www.uniprot.org/uniprot/P00805 P00805]
 +
** [http://www.uniprot.org/uniprot/P0A962 P0A962]
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=gtp cyclohydrolase ii|gtp cyclohydrolase}}
+
{{#set: common-name=asparaginase}}
−
{{#set: ec-number=ec-3.5.4.25}}
+
{{#set: ec-number=ec-3.5.1.1|ec-3.5.1.38}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb pathway associated=3}}
 
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:38, 15 March 2021

Reaction ASPARAGHYD-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • ASPARAGINE-DEG1-PWY-1, L-asparagine degradation III (mammalian):
    • 3 reactions found over 3 reactions in the full pathway
  • ASPASN-PWY, superpathway of L-aspartate and L-asparagine biosynthesis:
    • 4 reactions found over 2 reactions in the full pathway
  • ASPARAGINE-DEG1-PWY, L-asparagine degradation I:
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links





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