Difference between revisions of "RXN-15556"

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(Created page with "Category:reaction == Reaction DIHYDRODIPICSYN-RXN == * direction: ** left-to-right * common-name: ** 4-hydroxy-tetrahydrodipicolinate synthase * ec-number: ** [http://enzy...")
(Created page with "Category:reaction == Reaction RXN-15556 == * direction: ** left-to-right * common-name: ** ubiquitin-conjugating enzyme e2 * ec-number: ** [http://enzyme.expasy.org/EC/2.3...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DIHYDRODIPICSYN-RXN ==
+
== Reaction RXN-15556 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 4-hydroxy-tetrahydrodipicolinate synthase
+
** ubiquitin-conjugating enzyme e2
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.3.3.7 ec-4.3.3.7]
+
** [http://enzyme.expasy.org/EC/2.3.2.23 ec-2.3.2.23]
−
* synonymous:
 
−
** dihydrodipicolinic acid synthase
 
−
** dihydropicolinate synthetase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[L-ASPARTATE-SEMIALDEHYDE]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[CPD-14443]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[S-ubiquitinyl-UAP-E1-L-cysteine]][c] '''+''' 1 [[Ubiquitin-carrier-protein-E2-L-cysteine]][c] '''=>''' 1 [[S-ubiquitinyl-UCP-E2-L-cysteine]][c] '''+''' 1 [[Ubiquitin-activating-protein-E1-L-cys]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18863]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ07373]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ02926]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ19385]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10760]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ22197]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20603]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ00403]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21005]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ13418]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ15117]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20646]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08916]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14442]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18583]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ00896]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ21231]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20124]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18681]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ15747]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ18713]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ16104]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ19416]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21313]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5097]], L-lysine biosynthesis VI:
+
* [[PWY-7511]], protein ubiquitination:
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
−
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I:
 
 
** '''7''' reactions found over '''9''' reactions in the full pathway
 
** '''7''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-2941]], L-lysine biosynthesis II:
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-2942]], L-lysine biosynthesis III:
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR119447
−
* METANETX-RXN : MNXR113514
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R10147 R10147]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P43797 P43797]
 
−
** [http://www.uniprot.org/uniprot/O26892 O26892]
 
−
** [http://www.uniprot.org/uniprot/Q9Z6K9 Q9Z6K9]
 
−
** [http://www.uniprot.org/uniprot/Q9X1K9 Q9X1K9]
 
−
** [http://www.uniprot.org/uniprot/P19808 P19808]
 
−
** [http://www.uniprot.org/uniprot/Q9ZM13 Q9ZM13]
 
−
** [http://www.uniprot.org/uniprot/O05969 O05969]
 
−
** [http://www.uniprot.org/uniprot/Q9CF61 Q9CF61]
 
−
** [http://www.uniprot.org/uniprot/Q04796 Q04796]
 
−
** [http://www.uniprot.org/uniprot/Q57695 Q57695]
 
−
** [http://www.uniprot.org/uniprot/O25657 O25657]
 
−
** [http://www.uniprot.org/uniprot/O67216 O67216]
 
−
** [http://www.uniprot.org/uniprot/O29352 O29352]
 
−
** [http://www.uniprot.org/uniprot/O84366 O84366]
 
−
** [http://www.uniprot.org/uniprot/Q9PPB4 Q9PPB4]
 
−
** [http://www.uniprot.org/uniprot/P63945 P63945]
 
−
** [http://www.uniprot.org/uniprot/Q9JUU9 Q9JUU9]
 
−
** [http://www.uniprot.org/uniprot/Q9LZX6 Q9LZX6]
 
−
** [http://www.uniprot.org/uniprot/Q43038 Q43038]
 
−
** [http://www.uniprot.org/uniprot/P49423 P49423]
 
−
** [http://www.uniprot.org/uniprot/Q55513 Q55513]
 
−
** [http://www.uniprot.org/uniprot/P0A6L2 P0A6L2]
 
−
** [http://www.uniprot.org/uniprot/Q42948 Q42948]
 
−
** [http://www.uniprot.org/uniprot/Q42940 Q42940]
 
−
** [http://www.uniprot.org/uniprot/O86841 O86841]
 
−
** [http://www.uniprot.org/uniprot/P24847 P24847]
 
−
** [http://www.uniprot.org/uniprot/P24846 P24846]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=4-hydroxy-tetrahydrodipicolinate synthase}}
+
{{#set: common-name=ubiquitin-conjugating enzyme e2}}
−
{{#set: ec-number=ec-4.3.3.7}}
+
{{#set: ec-number=ec-2.3.2.23}}
−
{{#set: synonymous=dihydrodipicolinic acid synthase|dihydropicolinate synthetase}}
+
{{#set: nb gene associated=22}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=4}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
−
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction RXN-15556

  • direction:
    • left-to-right
  • common-name:
    • ubiquitin-conjugating enzyme e2
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7511, protein ubiquitination:
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR119447





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