Difference between revisions of "RXN-15563"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction RXN-12460 == * direction: ** left-to-right * common-name: ** l-asparaginyl-trnaasn hydrolase ** aminoacyl-trna hydrolase * ec-number: ** [htt...")
(Created page with "Category:reaction == Reaction RXN-15563 == * direction: ** left-to-right * common-name: ** n-terminal e2 ubiquitin-conjugating enzyme == Reaction formula == * 1 N-termin...")
 
(2 intermediate revisions by one other user not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-12460 ==
+
== Reaction RXN-15563 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** l-asparaginyl-trnaasn hydrolase
+
** n-terminal e2 ubiquitin-conjugating enzyme
** aminoacyl-trna hydrolase
 
* ec-number:
 
** [http://enzyme.expasy.org/EC/3.1.1.29 ec-3.1.1.29]
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[Charged-ASN-tRNAs]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ASN]][c] '''+''' 1 [[ASN-tRNAs]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[N-terminal-specific-UCP-E2-L-cysteine]][c] '''+''' 1 [[S-ubiquitinyl-UAP-E1-L-cysteine]][c] '''=>''' 1 [[S-ubi-N-term-specific-UCP-E2-L-cysteine]][c] '''+''' 1 [[Ubiquitin-activating-protein-E1-L-cys]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ20124]]
* Gene: [[SJ09079]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[SJ05960]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ00680]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ02121]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ03879]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY490-4]], L-asparagine biosynthesis III (tRNA-dependent):
+
* [[PWY-7511]], protein ubiquitination:
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR119451
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=aminoacyl-trna hydrolase|l-asparaginyl-trnaasn hydrolase}}
+
{{#set: common-name=n-terminal e2 ubiquitin-conjugating enzyme}}
{{#set: ec-number=ec-3.1.1.29}}
+
{{#set: nb gene associated=1}}
{{#set: nb gene associated=5}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:22, 18 March 2021

Reaction RXN-15563

  • direction:
    • left-to-right
  • common-name:
    • n-terminal e2 ubiquitin-conjugating enzyme

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7511, protein ubiquitination:
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR119451