Difference between revisions of "RXN-15565"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction RXN-9552 == * direction: ** left-to-right * common-name: ** 3-oxo-petroslinoyl-[acyl-carrier protein] reductase ** 3-oxoacyl-[acyl-carrier-pr...")
(Created page with "Category:reaction == Reaction ORNITHINE-CYCLODEAMINASE-RXN == * direction: ** left-to-right * common-name: ** ornithine cyclodeaminase * ec-number: ** [http://enzyme.expas...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-9552 ==
+
== Reaction ORNITHINE-CYCLODEAMINASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-oxo-petroslinoyl-[acyl-carrier protein] reductase
+
** ornithine cyclodeaminase
−
** 3-oxoacyl-[acyl-carrier-protein] reductase (nadph)
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.100 ec-1.1.1.100]
+
** [http://enzyme.expasy.org/EC/4.3.1.12 ec-4.3.1.12]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[3-oxo-petroselinoyl-ACPs]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[R-3-hydroxypetroselinoyl-ACPs]][c]
+
* 1 [[L-ORNITHINE]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[PRO]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ13014]]
+
* Gene: [[SJ10037]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ04229]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ17743]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5367]], petroselinate biosynthesis:
+
* [[ARG-GLU-PWY]], L-arginine degradation VII (arginase 3 pathway):
−
** '''2''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[ORN-AMINOPENTANOATE-CAT-PWY]], L-ornithine degradation I (L-proline biosynthesis):
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24369 24369]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00671 R00671]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q59701 Q59701]
 +
** [http://www.uniprot.org/uniprot/P09773 P09773]
 +
** [http://www.uniprot.org/uniprot/P33728 P33728]
 +
** [http://www.uniprot.org/uniprot/O68052 O68052]
 +
** [http://www.uniprot.org/uniprot/Q9WWA2 Q9WWA2]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=3-oxoacyl-[acyl-carrier-protein] reductase (nadph)|3-oxo-petroslinoyl-[acyl-carrier protein] reductase}}
+
{{#set: common-name=ornithine cyclodeaminase}}
−
{{#set: ec-number=ec-1.1.1.100}}
+
{{#set: ec-number=ec-4.3.1.12}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:06, 5 January 2021

Reaction ORNITHINE-CYCLODEAMINASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • ornithine cyclodeaminase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • ARG-GLU-PWY, L-arginine degradation VII (arginase 3 pathway):
    • 2 reactions found over 2 reactions in the full pathway
  • ORN-AMINOPENTANOATE-CAT-PWY, L-ornithine degradation I (L-proline biosynthesis):
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-15565&oldid=64402"