Difference between revisions of "RXN-15581"

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(Created page with "Category:reaction == Reaction RXN66-281 == * direction: ** left-to-right * common-name: ** squalene synthase ** farnesyl-diphosphate farnesyltransferase ** presqualene dip...")
(Created page with "Category:reaction == Reaction RXN-15581 == * direction: ** left-to-right * common-name: ** d-serine ammonia-lyase == Reaction formula == * 1 D-SERINE[c] '''=>''' 1 2...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN66-281 ==
+
== Reaction RXN-15581 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** squalene synthase
+
** d-serine ammonia-lyase
** farnesyl-diphosphate farnesyltransferase
 
** presqualene diphosphate:farnesyl-diphosphate farnesyltransferase
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[CPD-465]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NAD-P-OR-NOP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[SQUALENE]][c]
+
* 1 [[D-SERINE]][c] '''=>''' 1 [[2-AMINOACRYLATE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ13532]]
+
* Gene: [[SJ15468]]
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ02885]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY0-1535]], D-serine degradation:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
* LIGAND-RXN:
+
* METANETX-RXN : MNXR119463
** [http://www.genome.jp/dbget-bin/www_bget?R02872 R02872]
+
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=43009 43009]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=squalene synthase|farnesyl-diphosphate farnesyltransferase|presqualene diphosphate:farnesyl-diphosphate farnesyltransferase}}
+
{{#set: common-name=d-serine ammonia-lyase}}
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=1}}
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=1}}
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction RXN-15581

  • direction:
    • left-to-right
  • common-name:
    • d-serine ammonia-lyase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-1535, D-serine degradation:
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR119463
  • RHEA: