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| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction UROGENDECARBOX-RXN == | + | == Reaction ExchangeSeed-BIOTIN == |
| | * direction: | | * direction: |
| − | ** left-to-right | + | ** reversible |
| − | * common-name:
| |
| − | ** uroporphyrinogen decarboxylase
| |
| − | * ec-number:
| |
| − | ** [http://enzyme.expasy.org/EC/4.1.1.37 ec-4.1.1.37]
| |
| | == Reaction formula == | | == Reaction formula == |
| − | * 4 [[PROTON]][c] '''+''' 1 [[UROPORPHYRINOGEN-III]][c] '''=>''' 4 [[CARBON-DIOXIDE]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c] | + | * 1.0 [[BIOTIN]][C-BOUNDARY] '''<=>''' 1.0 [[BIOTIN]][e] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | * Gene: [[SJ09367]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ03594]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ09370]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| | == Pathway(s) == | | == Pathway(s) == |
| − | * [[PWY-7766]], heme b biosynthesis IV (Gram-positive bacteria):
| |
| − | ** '''3''' reactions found over '''5''' reactions in the full pathway
| |
| − | * [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
| |
| − | ** '''6''' reactions found over '''9''' reactions in the full pathway
| |
| − | * [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic):
| |
| − | ** '''4''' reactions found over '''4''' reactions in the full pathway
| |
| − | * [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III:
| |
| − | ** '''5''' reactions found over '''4''' reactions in the full pathway
| |
| − | * [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic):
| |
| − | ** '''4''' reactions found over '''9''' reactions in the full pathway
| |
| − | * [[HEMESYN2-PWY]], heme b biosynthesis II (oxygen-independent):
| |
| − | ** '''3''' reactions found over '''4''' reactions in the full pathway
| |
| − | * [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
| |
| − | ** '''5''' reactions found over '''9''' reactions in the full pathway
| |
| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | + | * category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| | == External links == | | == External links == |
| − | * RHEA:
| + | {{#set: direction=reversible}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19866 19866]
| + | {{#set: nb gene associated=0}} |
| − | * LIGAND-RXN:
| + | {{#set: nb pathway associated=0}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R03197 R03197]
| + | {{#set: reconstruction category=manual}} |
| − | * UNIPROT:
| + | {{#set: reconstruction tool=curation}} |
| − | ** [http://www.uniprot.org/uniprot/P06132 P06132]
| + | {{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}} |
| − | ** [http://www.uniprot.org/uniprot/P16891 P16891]
| + | {{#set: reconstruction source=import_from_medium}} |
| − | ** [http://www.uniprot.org/uniprot/P32395 P32395]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9PN54 Q9PN54]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9JV52 Q9JV52]
| |
| − | ** [http://www.uniprot.org/uniprot/P29680 P29680]
| |
| − | ** [http://www.uniprot.org/uniprot/P32347 P32347]
| |
| − | ** [http://www.uniprot.org/uniprot/P32920 P32920]
| |
| − | ** [http://www.uniprot.org/uniprot/P54224 P54224]
| |
| − | ** [http://www.uniprot.org/uniprot/O81220 O81220]
| |
| − | ** [http://www.uniprot.org/uniprot/P70697 P70697]
| |
| − | {{#set: direction=left-to-right}} | |
| − | {{#set: common-name=uroporphyrinogen decarboxylase}}
| |
| − | {{#set: ec-number=ec-4.1.1.37}}
| |
| − | {{#set: nb gene associated=3}} | |
| − | {{#set: nb pathway associated=7}} | |
| − | {{#set: reconstruction category=annotation|orthology}} | |
| − | {{#set: reconstruction tool=pathwaytools|pantograph}} | |
| − | {{#set: reconstruction comment=n.a}} | |
| − | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | |
