Difference between revisions of "RXN-15878"

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(Created page with "Category:reaction == Reaction DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN == * direction: ** left-to-right * common-name: ** deoxyribodipyrimidine photolyase * ec-number: ** [htt...")
(Created page with "Category:reaction == Reaction RXN-15878 == * direction: ** left-to-right * common-name: ** 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase * ec-number: ** [http://...")
 
(2 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN ==
+
== Reaction RXN-15878 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** deoxyribodipyrimidine photolyase
+
** 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.99.3 ec-4.1.99.3]
+
** [http://enzyme.expasy.org/EC/1.17.7.3 ec-1.17.7.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DNA-deoxycytidine-thymidine-dimer]][c] '''+''' 1 [[Light]][c] '''=>''' 1 [[DNA-Cytidines]][c] '''+''' 1 [[DNA-thymidines]][c]
+
* 1 [[2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE]][c] '''+''' 1 [[Reduced-flavodoxins]][c] '''=>''' 1 [[HYDROXY-METHYL-BUTENYL-DIP]][c] '''+''' 1 [[Oxidized-flavodoxins]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ08112]]
+
* Gene: [[SJ05642]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ04101]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13192]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I:
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00034 R00034]
+
** [http://www.genome.jp/dbget-bin/www_bget?R10859 R10859]
−
* UNIPROT:
+
* METANETX-RXN : MNXR114173
−
** [http://www.uniprot.org/uniprot/P12769 P12769]
+
* RHEA:
−
** [http://www.uniprot.org/uniprot/Q9JSP8 Q9JSP8]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=43606 43606]
−
** [http://www.uniprot.org/uniprot/Q9HQ46 Q9HQ46]
 
−
** [http://www.uniprot.org/uniprot/P12768 P12768]
 
−
** [http://www.uniprot.org/uniprot/P27526 P27526]
 
−
** [http://www.uniprot.org/uniprot/P25078 P25078]
 
−
** [http://www.uniprot.org/uniprot/Q43125 Q43125]
 
−
** [http://www.uniprot.org/uniprot/P40115 P40115]
 
−
** [http://www.uniprot.org/uniprot/Q28811 Q28811]
 
−
** [http://www.uniprot.org/uniprot/Q24443 Q24443]
 
−
** [http://www.uniprot.org/uniprot/Q91186 Q91186]
 
−
** [http://www.uniprot.org/uniprot/Q42696 Q42696]
 
−
** [http://www.uniprot.org/uniprot/P05066 P05066]
 
−
** [http://www.uniprot.org/uniprot/O24020 O24020]
 
−
** [http://www.uniprot.org/uniprot/O24374 O24374]
 
−
** [http://www.uniprot.org/uniprot/P00914 P00914]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=deoxyribodipyrimidine photolyase}}
+
{{#set: common-name=1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase}}
−
{{#set: ec-number=ec-4.1.99.3}}
+
{{#set: ec-number=ec-1.17.7.3}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction RXN-15878

  • direction:
    • left-to-right
  • common-name:
    • 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • NONMEVIPP-PWY, methylerythritol phosphate pathway I:
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links

  • LIGAND-RXN:
  • METANETX-RXN : MNXR114173
  • RHEA:





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