Difference between revisions of "RXN-16017"

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(Created page with "Category:reaction == Reaction RXN11884 == * direction: ** reversible == Reaction formula == * 1.0 4-METHYL-824-CHOLESTADIENOL[c] '''<=>''' 1.0 CPD-12860[c] == Gene...")
(Created page with "Category:reaction == Reaction DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN == * direction: ** left-to-right * common-name: ** diphosphomevalonate decarboxylase * ec-number: ** [ht...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN11884 ==
+
== Reaction DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** diphosphomevalonate decarboxylase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/4.1.1.33 ec-4.1.1.33]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[4-METHYL-824-CHOLESTADIENOL]][c] '''<=>''' 1.0 [[CPD-12860]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CPD-641]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ05356]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-8191]]:
+
* [[PWY-7391]], isoprene biosynthesis II (engineered):
−
** '''15''' reactions found over '''n.a''' reactions in the full pathway
+
** '''7''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-922]], mevalonate pathway I:
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[reaction_creator_sjap]]; tool: [[curation]]; comment: curation sterols (girard et al.)
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
+
* RHEA:
−
{{#set: nb gene associated=0}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23733 23733]
−
{{#set: nb pathway associated=1}}
+
* LIGAND-RXN:
−
{{#set: reconstruction category=manual}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01121 R01121]
−
{{#set: reconstruction tool=curation}}
+
* UNIPROT:
−
{{#set: reconstruction comment=curation sterols (girard et al.)}}
+
** [http://www.uniprot.org/uniprot/P32377 P32377]
−
{{#set: reconstruction source=reaction_creator_sjap}}
+
** [http://www.uniprot.org/uniprot/Q9U2A1 Q9U2A1]
 +
** [http://www.uniprot.org/uniprot/Q9U294 Q9U294]
 +
** [http://www.uniprot.org/uniprot/O13963 O13963]
 +
** [http://www.uniprot.org/uniprot/Q9M381 Q9M381]
 +
** [http://www.uniprot.org/uniprot/O23722 O23722]
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=diphosphomevalonate decarboxylase}}
 +
{{#set: ec-number=ec-4.1.1.33}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=2}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:26, 15 January 2021

Reaction DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • diphosphomevalonate decarboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7391, isoprene biosynthesis II (engineered):
    • 7 reactions found over 8 reactions in the full pathway
  • PWY-922, mevalonate pathway I:
    • 7 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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