Difference between revisions of "RXN-16030"

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(Created page with "Category:reaction == Reaction THREONINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** threonine-trna ligase * ec-number: ** [http://enzyme.expasy.org...")
(Created page with "Category:reaction == Reaction RXN-16030 == * direction: ** reversible * common-name: ** phosphatidate phosphatase * ec-number: ** [http://enzyme.expasy.org/EC/3.1.3.4 ec-3...")
 
(5 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction THREONINE--TRNA-LIGASE-RXN ==
+
== Reaction RXN-16030 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** threonine-trna ligase
+
** phosphatidate phosphatase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.3 ec-6.1.1.3]
+
** [http://enzyme.expasy.org/EC/3.1.3.4 ec-3.1.3.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[THR]][c] '''+''' 1 [[THR-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-THR-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[CPD-17273]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[CPD-17271]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03199]]
+
* Gene: [[SJ07066]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21389]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21676]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ13957]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ20100]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ17482]]
+
* Gene: [[SJ07984]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
 
−
** '''21''' reactions found over '''21''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR119787
−
* RHEA:
+
{{#set: direction=reversible}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24625 24625]
+
{{#set: common-name=phosphatidate phosphatase}}
−
* LIGAND-RXN:
+
{{#set: ec-number=ec-3.1.3.4}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R03663 R03663]
+
{{#set: nb gene associated=5}}
−
* UNIPROT:
+
{{#set: nb pathway associated=0}}
−
** [http://www.uniprot.org/uniprot/O83809 O83809]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/Q9JVA3 Q9JVA3]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P56071 P56071]
 
−
** [http://www.uniprot.org/uniprot/O58430 O58430]
 
−
** [http://www.uniprot.org/uniprot/P47615 P47615]
 
−
** [http://www.uniprot.org/uniprot/O05947 O05947]
 
−
** [http://www.uniprot.org/uniprot/Q9PIS3 Q9PIS3]
 
−
** [http://www.uniprot.org/uniprot/O67583 O67583]
 
−
** [http://www.uniprot.org/uniprot/O27504 O27504]
 
−
** [http://www.uniprot.org/uniprot/O51662 O51662]
 
−
** [http://www.uniprot.org/uniprot/Q9ZMV3 Q9ZMV3]
 
−
** [http://www.uniprot.org/uniprot/Q9Z7A0 Q9Z7A0]
 
−
** [http://www.uniprot.org/uniprot/Q9WZJ9 Q9WZJ9]
 
−
** [http://www.uniprot.org/uniprot/Q9CED2 Q9CED2]
 
−
** [http://www.uniprot.org/uniprot/P43014 P43014]
 
−
** [http://www.uniprot.org/uniprot/P46244 P46244]
 
−
** [http://www.uniprot.org/uniprot/P75225 P75225]
 
−
** [http://www.uniprot.org/uniprot/Q48989 Q48989]
 
−
** [http://www.uniprot.org/uniprot/P0A8M3 P0A8M3]
 
−
** [http://www.uniprot.org/uniprot/O04630 O04630]
 
−
** [http://www.uniprot.org/uniprot/P18255 P18255]
 
−
** [http://www.uniprot.org/uniprot/P18256 P18256]
 
−
** [http://www.uniprot.org/uniprot/P04801 P04801]
 
−
** [http://www.uniprot.org/uniprot/P07236 P07236]
 
−
** [http://www.uniprot.org/uniprot/P26639 P26639]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=threonine-trna ligase}}
 
−
{{#set: ec-number=ec-6.1.1.3}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction RXN-16030

  • direction:
    • reversible
  • common-name:
    • phosphatidate phosphatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR119787





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