Difference between revisions of "RXN-16040"

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(Created page with "Category:reaction == Reaction BADH-RXN == * direction: ** reversible * common-name: ** betaine-aldehyde dehydrogenase ** betaine aldehyde dehydrogenase * ec-number: ** [ht...")
(Created page with "Category:reaction == Reaction RXN-16040 == * direction: ** left-to-right * common-name: ** γ-linolenoyl-lipid ω3 desaturase * ec-number: ** [http://enzyme.expa...")
 
(2 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction BADH-RXN ==
+
== Reaction RXN-16040 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** betaine-aldehyde dehydrogenase
+
** γ-linolenoyl-lipid ω3 desaturase
−
** betaine aldehyde dehydrogenase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.2.1.8 ec-1.2.1.8]
+
** [http://enzyme.expasy.org/EC/1.14.19.25 ec-1.14.19.25]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[BETAINE_ALDEHYDE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[BETAINE]][c] '''+''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c]
+
* 2 [[FERROCYTOCHROME-B5]][c] '''+''' 1 [[Gamma-linolenoyl-groups]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[CPD-17278]][c] '''+''' 2 [[FERRICYTOCHROME-B5]][c] '''+''' 2 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ03069]]
−
* Gene: [[SJ00435]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ09228]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ11330]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ22552]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ11331]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ09287]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06047]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05897]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY1F-353]], glycine betaine biosynthesis III (plants):
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[BETSYN-PWY]], glycine betaine biosynthesis I (Gram-negative bacteria):
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[CHOLINE-BETAINE-ANA-PWY]], choline degradation I:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-3722]], glycine betaine biosynthesis II (Gram-positive bacteria):
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7494]], choline degradation IV:
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR119794
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30070 30070]
+
{{#set: direction=left-to-right}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15305 15305]
+
{{#set: common-name=&gamma;-linolenoyl-lipid &omega;3 desaturase}}
−
* LIGAND-RXN:
+
{{#set: ec-number=ec-1.14.19.25}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R02565 R02565]
+
{{#set: nb gene associated=2}}
−
* UNIPROT:
+
{{#set: nb pathway associated=0}}
−
** [http://www.uniprot.org/uniprot/P17202 P17202]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P17445 P17445]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P28237 P28237]
 
−
** [http://www.uniprot.org/uniprot/P42757 P42757]
 
−
** [http://www.uniprot.org/uniprot/Q40024 Q40024]
 
−
** [http://www.uniprot.org/uniprot/O24174 O24174]
 
−
** [http://www.uniprot.org/uniprot/Q43828 Q43828]
 
−
** [http://www.uniprot.org/uniprot/Q43829 Q43829]
 
−
** [http://www.uniprot.org/uniprot/O22477 O22477]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=betaine aldehyde dehydrogenase|betaine-aldehyde dehydrogenase}}
 
−
{{#set: ec-number=ec-1.2.1.8}}
 
−
{{#set: nb gene associated=7}}
 
−
{{#set: nb pathway associated=5}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction RXN-16040

  • direction:
    • left-to-right
  • common-name:
    • γ-linolenoyl-lipid ω3 desaturase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR119794





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