Difference between revisions of "RXN-16040"

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(Created page with "Category:reaction == Reaction CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.1.1.104 ec-2.1.1.104] ==...")
(Created page with "Category:reaction == Reaction RXN-16040 == * direction: ** left-to-right * common-name: ** γ-linolenoyl-lipid ω3 desaturase * ec-number: ** [http://enzyme.expa...")
 
(6 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN ==
+
== Reaction RXN-16040 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** γ-linolenoyl-lipid ω3 desaturase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.1.104 ec-2.1.1.104]
+
** [http://enzyme.expasy.org/EC/1.14.19.25 ec-1.14.19.25]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CAFFEOYL-COA]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[FERULOYL-COA]][c] '''+''' 1 [[PROTON]][c]
+
* 2 [[FERROCYTOCHROME-B5]][c] '''+''' 1 [[Gamma-linolenoyl-groups]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[CPD-17278]][c] '''+''' 2 [[FERRICYTOCHROME-B5]][c] '''+''' 2 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ01911]]
+
* Gene: [[SJ03069]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
* Gene: [[SJ09228]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-361]], phenylpropanoid biosynthesis:
 
−
** '''7''' reactions found over '''15''' reactions in the full pathway
 
−
* [[PWY-7398]], coumarins biosynthesis (engineered):
 
−
** '''3''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-5710]], capsaicin biosynthesis:
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6792]], scopoletin biosynthesis:
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-1121]], suberin monomers biosynthesis:
 
−
** '''9''' reactions found over '''19''' reactions in the full pathway
 
−
* [[PWY-7498]], phenylpropanoids methylation (ice plant):
 
−
** '''2''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6039]], chlorogenic acid biosynthesis I:
 
−
** '''1''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR119794
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16926 16926]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01942 R01942]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P28034 P28034]
 
−
** [http://www.uniprot.org/uniprot/O65307 O65307]
 
−
** [http://www.uniprot.org/uniprot/Q42945 Q42945]
 
−
** [http://www.uniprot.org/uniprot/O24144 O24144]
 
−
** [http://www.uniprot.org/uniprot/O24149 O24149]
 
−
** [http://www.uniprot.org/uniprot/O24150 O24150]
 
−
** [http://www.uniprot.org/uniprot/O24151 O24151]
 
−
** [http://www.uniprot.org/uniprot/O04899 O04899]
 
−
** [http://www.uniprot.org/uniprot/O49499 O49499]
 
−
** [http://www.uniprot.org/uniprot/Q9SVI7 Q9SVI7]
 
−
** [http://www.uniprot.org/uniprot/Q40313 Q40313]
 
−
** [http://www.uniprot.org/uniprot/Q43095 Q43095]
 
−
** [http://www.uniprot.org/uniprot/O04854 O04854]
 
−
** [http://www.uniprot.org/uniprot/O65162 O65162]
 
−
** [http://www.uniprot.org/uniprot/O65362 O65362]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-2.1.1.104}}
+
{{#set: common-name=&gamma;-linolenoyl-lipid &omega;3 desaturase}}
−
{{#set: nb gene associated=1}}
+
{{#set: ec-number=ec-1.14.19.25}}
−
{{#set: nb pathway associated=7}}
+
{{#set: nb gene associated=2}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction RXN-16040

  • direction:
    • left-to-right
  • common-name:
    • γ-linolenoyl-lipid ω3 desaturase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR119794





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