Difference between revisions of "RXN-16049"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OXALODECARB-RXN OXALODECARB-RXN] == * direction: ** left-to-right * common-name: ** malate dehydrog...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN] == * direction: **...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OXALODECARB-RXN OXALODECARB-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** malate dehydrogenase (decarboxylating) (nad+)
+
** tryptophan decarboxylase
−
** oxaloacetate decarboxylase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.40 ec-1.1.1.40]
+
** [http://enzyme.expasy.org/EC/4.1.1.q ec-4.1.1.q]
−
** [http://enzyme.expasy.org/EC/4.1.1.3 ec-4.1.1.3]
 
−
** [http://enzyme.expasy.org/EC/1.1.1.38 ec-1.1.1.38]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1 [[PROTON]][c] '''+''' 1 [[TRP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[TRYPTAMINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ11643]]
+
* Gene: [[SJ11952]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14191]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13180]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[P184-PWY]], protocatechuate degradation I (meta-cleavage pathway): [http://metacyc.org/META/NEW-IMAGE?object=P184-PWY P184-PWY]
+
* [[PWY-3181]], L-tryptophan degradation VI (via tryptamine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3181 PWY-3181]
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-6339]], syringate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6339 PWY-6339]
+
* [[PWY-581]], indole-3-acetate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-581 PWY-581]
−
** '''2''' reactions found over '''9''' reactions in the full pathway
+
** '''5''' reactions found over '''12''' reactions in the full pathway
−
* [[METHYLGALLATE-DEGRADATION-PWY]], methylgallate degradation: [http://metacyc.org/META/NEW-IMAGE?object=METHYLGALLATE-DEGRADATION-PWY METHYLGALLATE-DEGRADATION-PWY]
+
* [[PWY-5473]], hydroxycinnamic acid serotonin amides biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5473 PWY-5473]
−
** '''2''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5877]], beta-carboline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5877 PWY-5877]
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6326]], camptothecin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6326 PWY-6326]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6307]], L-tryptophan degradation X (mammalian, via tryptamine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6307 PWY-6307]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7936]], psilocybin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7936 PWY-7936]
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5290]], secologanin and strictosidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5290 PWY-5290]
 +
** '''2''' reactions found over '''16''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15642 15642]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30340 30340]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00217 R00217]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00685 R00685]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P13187 P13187]
+
** [http://www.uniprot.org/uniprot/P27718 P27718]
−
** [http://www.uniprot.org/uniprot/P13155 P13155]
+
** [http://www.uniprot.org/uniprot/P05031 P05031]
−
** [http://www.uniprot.org/uniprot/P13156 P13156]
+
** [http://www.uniprot.org/uniprot/P20711 P20711]
−
** [http://www.uniprot.org/uniprot/Q58628 Q58628]
+
** [http://www.uniprot.org/uniprot/P17770 P17770]
 +
** [http://www.uniprot.org/uniprot/P14173 P14173]
 +
** [http://www.uniprot.org/uniprot/P22781 P22781]
 +
** [http://www.uniprot.org/uniprot/P54770 P54770]
 +
** [http://www.uniprot.org/uniprot/O82414 O82414]
 +
** [http://www.uniprot.org/uniprot/P54771 P54771]
 +
** [http://www.uniprot.org/uniprot/P34751 P34751]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=malate dehydrogenase (decarboxylating) (nad+)|oxaloacetate decarboxylase}}
+
{{#set: common-name=tryptophan decarboxylase}}
−
{{#set: ec-number=ec-1.1.1.40|ec-1.1.1.38|ec-4.1.1.3}}
+
{{#set: ec-number=ec-4.1.1.q}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=8}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 09:30, 27 August 2019

Reaction AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • tryptophan decarboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-3181, L-tryptophan degradation VI (via tryptamine): PWY-3181
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-581, indole-3-acetate biosynthesis II: PWY-581
    • 5 reactions found over 12 reactions in the full pathway
  • PWY-5473, hydroxycinnamic acid serotonin amides biosynthesis: PWY-5473
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-5877, beta-carboline biosynthesis: PWY-5877
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-6326, camptothecin biosynthesis: PWY-6326
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-6307, L-tryptophan degradation X (mammalian, via tryptamine): PWY-6307
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7936, psilocybin biosynthesis: PWY-7936
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-5290, secologanin and strictosidine biosynthesis: PWY-5290
    • 2 reactions found over 16 reactions in the full pathway

Reconstruction information

External links





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