Difference between revisions of "RXN-16049"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN] == * direction: **...")
(Created page with "Category:reaction == Reaction 2.4.1.123-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.4.1.123 ec-2.4.1.123] == Reaction formula == *...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN] ==
+
== Reaction 2.4.1.123-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** tryptophan decarboxylase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.1.q ec-4.1.1.q]
+
** [http://enzyme.expasy.org/EC/2.4.1.123 ec-2.4.1.123]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PROTON]][c] '''+''' 1 [[TRP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[TRYPTAMINE]][c]
+
* 1 [[CPD-14553]][c] '''+''' 1 [[MYO-INOSITOL]][c] '''=>''' 1 [[CPD-458]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[UDP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ11952]]
+
* Gene: [[SJ20314]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-3181]], L-tryptophan degradation VI (via tryptamine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3181 PWY-3181]
+
* [[PWY-5337]], stachyose biosynthesis:
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-581]], indole-3-acetate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-581 PWY-581]
+
* [[PWY-6524]], lychnose and isolychnose biosynthesis:
−
** '''5''' reactions found over '''12''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-5473]], hydroxycinnamic acid serotonin amides biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5473 PWY-5473]
+
* [[PWY-6525]], stellariose and mediose biosynthesis:
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5877]], beta-carboline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5877 PWY-5877]
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6326]], camptothecin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6326 PWY-6326]
 
 
** '''2''' reactions found over '''5''' reactions in the full pathway
 
** '''2''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6307]], L-tryptophan degradation X (mammalian, via tryptamine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6307 PWY-6307]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7936]], psilocybin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7936 PWY-7936]
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5290]], secologanin and strictosidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5290 PWY-5290]
 
−
** '''2''' reactions found over '''16''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30340 30340]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12465 12465]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00685 R00685]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01192 R01192]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P27718 P27718]
 
−
** [http://www.uniprot.org/uniprot/P05031 P05031]
 
−
** [http://www.uniprot.org/uniprot/P20711 P20711]
 
−
** [http://www.uniprot.org/uniprot/P17770 P17770]
 
−
** [http://www.uniprot.org/uniprot/P14173 P14173]
 
−
** [http://www.uniprot.org/uniprot/P22781 P22781]
 
−
** [http://www.uniprot.org/uniprot/P54770 P54770]
 
−
** [http://www.uniprot.org/uniprot/O82414 O82414]
 
−
** [http://www.uniprot.org/uniprot/P54771 P54771]
 
−
** [http://www.uniprot.org/uniprot/P34751 P34751]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=tryptophan decarboxylase}}
+
{{#set: ec-number=ec-2.4.1.123}}
−
{{#set: ec-number=ec-4.1.1.q}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=8}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Revision as of 20:40, 18 December 2020

Reaction 2.4.1.123-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5337, stachyose biosynthesis:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6524, lychnose and isolychnose biosynthesis:
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-6525, stellariose and mediose biosynthesis:
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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