Difference between revisions of "RXN-16067"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction THIAMIN-PYROPHOSPHOKINASE-RXN == * direction: ** left-to-right * common-name: ** thiamine pyrophosphokinase * ec-number: ** [http://enzyme.ex...")
(Created page with "Category:reaction == Reaction 2.4.1.224-RXN == * direction: ** left-to-right * common-name: ** n-acetylglucosaminyl-proteoglycan 4-β-glucuronosyltransferase * ec-numb...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction THIAMIN-PYROPHOSPHOKINASE-RXN ==
+
== Reaction 2.4.1.224-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** thiamine pyrophosphokinase
+
** n-acetylglucosaminyl-proteoglycan 4-β-glucuronosyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.6.2 ec-2.7.6.2]
+
** [http://enzyme.expasy.org/EC/2.4.1.224 ec-2.4.1.224]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[THIAMINE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[THIAMINE-PYROPHOSPHATE]][c]
+
* 1 [[GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Protein]][c] '''+''' 1 [[UDP-N-ACETYL-D-GLUCOSAMINE]][c] '''=>''' 1 [[GlcNAc-GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Core]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[UDP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ14636]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ14184]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ01052]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ08295]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ07780]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ08296]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ14192]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ11522]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ08300]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6907]], thiamine diphosphate biosynthesis III (Staphylococcus):
+
* [[PWY-6558]], heparan sulfate biosynthesis (late stages):
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''7''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-6908]], thiamine diphosphate biosynthesis IV (eukaryotes):
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7356]], thiamine salvage IV (yeast):
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6898]], thiamine salvage III:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11577 11577]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16214 16214]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00619 R00619]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07334 R07334]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P35202 P35202]
 
−
** [http://www.uniprot.org/uniprot/P41888 P41888]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=thiamine pyrophosphokinase}}
+
{{#set: common-name=n-acetylglucosaminyl-proteoglycan 4-&beta;-glucuronosyltransferase}}
−
{{#set: ec-number=ec-2.7.6.2}}
+
{{#set: ec-number=ec-2.4.1.224}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=8}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:33, 5 January 2021

Reaction 2.4.1.224-RXN

  • direction:
    • left-to-right
  • common-name:
    • n-acetylglucosaminyl-proteoglycan 4-β-glucuronosyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6558, heparan sulfate biosynthesis (late stages):
    • 7 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-16067&oldid=76146"