Difference between revisions of "RXN-16076"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6100 PWY-6100] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2759 tax-27...")
(Created page with "Category:reaction == Reaction RIBULP3EPIM-RXN == * direction: ** reversible * common-name: ** ribulose-5-phosphate 3-epimerase * ec-number: ** [http://enzyme.expasy.org/EC...")
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6100 PWY-6100] ==
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== Reaction RIBULP3EPIM-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-2759 tax-2759]
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** reversible
 
* common-name:
 
* common-name:
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** l-carnitine biosynthesis
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** ribulose-5-phosphate 3-epimerase
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== Reaction(s) found ==
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* ec-number:
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* [[1.14.11.1-RXN]]
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** [http://enzyme.expasy.org/EC/5.1.3.1 ec-5.1.3.1]
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* [[RXN-9896]]
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== Reaction formula ==
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* [[TRIMETHYLLYSINE-DIOXYGENASE-RXN]]
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* 1 [[RIBULOSE-5P]][c] '''<=>''' 1 [[XYLULOSE-5-PHOSPHATE]][c]
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== Reaction(s) not found ==
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== Gene(s) associated with this reaction  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.47-RXN 1.2.1.47-RXN]
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* Gene: [[SJ11687]]
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{{#set: taxonomic-range=tax-2759}}
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** Category: [[annotation]]
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{{#set: common-name=l-carnitine biosynthesis}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: nb reaction found=3}}
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** Category: [[orthology]]
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{{#set: completion rate=0.75}}
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: nb total reaction=4}}
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ04905]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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== Pathway(s)  ==
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* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle):
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[P21-PWY]], pentose phosphate pathway (partial):
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch):
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-5723]], Rubisco shunt:
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** '''10''' reactions found over '''10''' reactions in the full pathway
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* [[P124-PWY]], Bifidobacterium shunt:
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** '''12''' reactions found over '''15''' reactions in the full pathway
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* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
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** '''12''' reactions found over '''13''' reactions in the full pathway
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* [[P122-PWY]], heterolactic fermentation:
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** '''16''' reactions found over '''18''' reactions in the full pathway
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* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
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** '''11''' reactions found over '''12''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13680 13680]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R01529 R01529]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P40117 P40117]
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** [http://www.uniprot.org/uniprot/Q9CEB9 Q9CEB9]
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** [http://www.uniprot.org/uniprot/P0AG07 P0AG07]
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** [http://www.uniprot.org/uniprot/Q9PI57 Q9PI57]
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** [http://www.uniprot.org/uniprot/Q9JUA9 Q9JUA9]
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** [http://www.uniprot.org/uniprot/P45455 P45455]
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** [http://www.uniprot.org/uniprot/Q43157 Q43157]
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** [http://www.uniprot.org/uniprot/Q43843 Q43843]
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** [http://www.uniprot.org/uniprot/P74061 P74061]
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** [http://www.uniprot.org/uniprot/O23782 O23782]
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** [http://www.uniprot.org/uniprot/P51012 P51012]
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{{#set: direction=reversible}}
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{{#set: common-name=ribulose-5-phosphate 3-epimerase}}
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{{#set: ec-number=ec-5.1.3.1}}
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{{#set: nb gene associated=2}}
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{{#set: nb pathway associated=8}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:45, 18 December 2020

Reaction RIBULP3EPIM-RXN

  • direction:
    • reversible
  • common-name:
    • ribulose-5-phosphate 3-epimerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-1861, formaldehyde assimilation II (assimilatory RuMP Cycle):
    • 7 reactions found over 9 reactions in the full pathway
  • P21-PWY, pentose phosphate pathway (partial):
    • 3 reactions found over 3 reactions in the full pathway
  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch):
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-5723, Rubisco shunt:
    • 10 reactions found over 10 reactions in the full pathway
  • P124-PWY, Bifidobacterium shunt:
    • 12 reactions found over 15 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle:
    • 12 reactions found over 13 reactions in the full pathway
  • P122-PWY, heterolactic fermentation:
    • 16 reactions found over 18 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle):
    • 11 reactions found over 12 reactions in the full pathway

Reconstruction information

External links





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