Difference between revisions of "RXN-16076"

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(Created page with "Category:reaction == Reaction RIBULP3EPIM-RXN == * direction: ** reversible * common-name: ** ribulose-5-phosphate 3-epimerase * ec-number: ** [http://enzyme.expasy.org/EC...")
(Created page with "Category:reaction == Reaction RXN0-302 == * direction: ** left-to-right * common-name: ** 2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase * ec-number: ** [http://enzy...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RIBULP3EPIM-RXN ==
+
== Reaction RXN0-302 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** ribulose-5-phosphate 3-epimerase
+
** 2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.1.3.1 ec-5.1.3.1]
+
** [http://enzyme.expasy.org/EC/4.6.1.12 ec-4.6.1.12]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[RIBULOSE-5P]][c] '''<=>''' 1 [[XYLULOSE-5-PHOSPHATE]][c]
+
* 1 [[2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET]][c] '''=>''' 1 [[2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE]][c] '''+''' 1 [[CMP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ11687]]
+
* Gene: [[SJ21110]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ04905]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle):
+
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I:
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
−
* [[P21-PWY]], pentose phosphate pathway (partial):
+
* [[PWY-7560]], methylerythritol phosphate pathway II:
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
−
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch):
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5723]], Rubisco shunt:
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
* [[P124-PWY]], Bifidobacterium shunt:
 
−
** '''12''' reactions found over '''15''' reactions in the full pathway
 
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
* [[P122-PWY]], heterolactic fermentation:
 
−
** '''16''' reactions found over '''18''' reactions in the full pathway
 
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13680 13680]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23865 23865]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01529 R01529]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05637 R05637]
−
* UNIPROT:
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P40117 P40117]
+
{{#set: common-name=2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase}}
−
** [http://www.uniprot.org/uniprot/Q9CEB9 Q9CEB9]
+
{{#set: ec-number=ec-4.6.1.12}}
−
** [http://www.uniprot.org/uniprot/P0AG07 P0AG07]
+
{{#set: nb gene associated=1}}
−
** [http://www.uniprot.org/uniprot/Q9PI57 Q9PI57]
+
{{#set: nb pathway associated=2}}
−
** [http://www.uniprot.org/uniprot/Q9JUA9 Q9JUA9]
 
−
** [http://www.uniprot.org/uniprot/P45455 P45455]
 
−
** [http://www.uniprot.org/uniprot/Q43157 Q43157]
 
−
** [http://www.uniprot.org/uniprot/Q43843 Q43843]
 
−
** [http://www.uniprot.org/uniprot/P74061 P74061]
 
−
** [http://www.uniprot.org/uniprot/O23782 O23782]
 
−
** [http://www.uniprot.org/uniprot/P51012 P51012]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=ribulose-5-phosphate 3-epimerase}}
 
−
{{#set: ec-number=ec-5.1.3.1}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=8}}
 
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:06, 5 January 2021

Reaction RXN0-302

  • direction:
    • left-to-right
  • common-name:
    • 2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • NONMEVIPP-PWY, methylerythritol phosphate pathway I:
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7560, methylerythritol phosphate pathway II:
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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