Difference between revisions of "RXN-16097"

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(Created page with "Category:reaction == Reaction ORNITHINE-GLU-AMINOTRANSFERASE-RXN == * direction: ** reversible * common-name: ** ornithine--oxo-glutarate aminotransferase ** ornithine-&de...")
(Created page with "Category:reaction == Reaction RXN-16097 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.3.1.93 ec-1.3.1.93] == Reaction formula == * 1 CP...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ORNITHINE-GLU-AMINOTRANSFERASE-RXN ==
+
== Reaction RXN-16097 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** ornithine--oxo-glutarate aminotransferase
 
−
** ornithine-δ-aminotransferase
 
 
* ec-number:
 
* ec-number:
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** [http://enzyme.expasy.org/EC/2.6.1.13 ec-2.6.1.13]
+
** [http://enzyme.expasy.org/EC/1.3.1.93 ec-1.3.1.93]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[L-ORNITHINE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c]
+
* 1 [[CPD-17348]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-12646]][c] '''+''' 1 [[NADP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09475]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6922]], L-N&delta;-acetylornithine biosynthesis:
+
* [[PWY-7725]], arachidonate biosynthesis V (8-detaturase, mammals):
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6598]], sciadonate biosynthesis:
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7601]], arachidonate biosynthesis IV (8-detaturase, lower eukaryotes):
 
** '''5''' reactions found over '''7''' reactions in the full pathway
 
** '''5''' reactions found over '''7''' reactions in the full pathway
−
* [[ARGININE-SYN4-PWY]], L-ornithine biosynthesis II:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-3341]], L-proline biosynthesis III (from L-ornithine):
 
−
** '''4''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6344]], L-ornithine degradation II (Stickland reaction):
 
−
** '''2''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-4981]], L-proline biosynthesis II (from arginine):
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[ARG-PRO-PWY]], L-arginine degradation VI (arginase 2 pathway):
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[CITRULBIO-PWY]], L-citrulline biosynthesis:
 
−
** '''7''' reactions found over '''8''' reactions in the full pathway
 
−
* [[ARGASEDEG-PWY]], L-arginine degradation I (arginase pathway):
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR119845
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25160 25160]
+
{{#set: direction=left-to-right}}
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* LIGAND-RXN:
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{{#set: ec-number=ec-1.3.1.93}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00667 R00667]
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{{#set: nb gene associated=0}}
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{{#set: direction=reversible}}
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{{#set: nb pathway associated=3}}
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{{#set: common-name=ornithine--oxo-glutarate aminotransferase|ornithine-&delta;-aminotransferase}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: ec-number=ec-2.6.1.13}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: nb gene associated=1}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: nb pathway associated=8}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Latest revision as of 11:19, 18 March 2021

Reaction RXN-16097

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7725, arachidonate biosynthesis V (8-detaturase, mammals):
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-6598, sciadonate biosynthesis:
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7601, arachidonate biosynthesis IV (8-detaturase, lower eukaryotes):
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR119845





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