Difference between revisions of "RXN-16097"
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(Created page with "Category:reaction == Reaction RXN-10939 == * direction: ** left-to-right * common-name: ** inositol 1,3,4-trisphosphate 1-phosphatase * ec-number: ** [http://enzyme.expasy...") |
(Created page with "Category:reaction == Reaction ORNITHINE-GLU-AMINOTRANSFERASE-RXN == * direction: ** reversible * common-name: ** ornithine--oxo-glutarate aminotransferase ** ornithine-&de...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction ORNITHINE-GLU-AMINOTRANSFERASE-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** ornithine--oxo-glutarate aminotransferase |
+ | ** ornithine-δ-aminotransferase | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/2.6.1.13 ec-2.6.1.13] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[L-ORNITHINE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ09475]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** Source: [[ | + | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY-6922]], L-Nδ-acetylornithine biosynthesis: | ||
+ | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[ARGININE-SYN4-PWY]], L-ornithine biosynthesis II: | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-3341]], L-proline biosynthesis III (from L-ornithine): | ||
+ | ** '''4''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6344]], L-ornithine degradation II (Stickland reaction): | ||
+ | ** '''2''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-4981]], L-proline biosynthesis II (from arginine): | ||
+ | ** '''3''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[ARG-PRO-PWY]], L-arginine degradation VI (arginase 2 pathway): | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[CITRULBIO-PWY]], L-citrulline biosynthesis: | ||
+ | ** '''7''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[ARGASEDEG-PWY]], L-arginine degradation I (arginase pathway): | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * category: [[orthology]]; source: [[ | + | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | |||
== External links == | == External links == | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25160 25160] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00667 R00667] |
− | {{#set: direction= | + | {{#set: direction=reversible}} |
− | {{#set: common-name= | + | {{#set: common-name=ornithine--oxo-glutarate aminotransferase|ornithine-δ-aminotransferase}} |
− | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-2.6.1.13}} |
{{#set: nb gene associated=1}} | {{#set: nb gene associated=1}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=8}} |
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 13:14, 14 January 2021
Contents
Reaction ORNITHINE-GLU-AMINOTRANSFERASE-RXN
- direction:
- reversible
- common-name:
- ornithine--oxo-glutarate aminotransferase
- ornithine-δ-aminotransferase
- ec-number:
Reaction formula
- 1 2-KETOGLUTARATE[c] + 1 L-ORNITHINE[c] <=> 1 GLT[c] + 1 L-GLUTAMATE_GAMMA-SEMIALDEHYDE[c]
Gene(s) associated with this reaction
- Gene: SJ09475
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-6922, L-Nδ-acetylornithine biosynthesis:
- 5 reactions found over 7 reactions in the full pathway
- ARGININE-SYN4-PWY, L-ornithine biosynthesis II:
- 3 reactions found over 4 reactions in the full pathway
- PWY-3341, L-proline biosynthesis III (from L-ornithine):
- 4 reactions found over 3 reactions in the full pathway
- PWY-6344, L-ornithine degradation II (Stickland reaction):
- 2 reactions found over 9 reactions in the full pathway
- PWY-4981, L-proline biosynthesis II (from arginine):
- 3 reactions found over 6 reactions in the full pathway
- ARG-PRO-PWY, L-arginine degradation VI (arginase 2 pathway):
- 3 reactions found over 4 reactions in the full pathway
- CITRULBIO-PWY, L-citrulline biosynthesis:
- 7 reactions found over 8 reactions in the full pathway
- ARGASEDEG-PWY, L-arginine degradation I (arginase pathway):
- 3 reactions found over 3 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links