Difference between revisions of "RXN-16132"

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(Created page with "Category:reaction == Reaction GLYRIBONUCSYN-RXN == * direction: ** left-to-right * common-name: ** phosphoribosylamine-glycine ligase * ec-number: ** [http://enzyme.expasy...")
(Created page with "Category:reaction == Reaction MALSYN-RXN == * direction: ** left-to-right * common-name: ** malate synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.3.3.9 ec-2.3.3.9...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLYRIBONUCSYN-RXN ==
+
== Reaction MALSYN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** phosphoribosylamine-glycine ligase
+
** malate synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.4.13 ec-6.3.4.13]
+
** [http://enzyme.expasy.org/EC/2.3.3.9 ec-2.3.3.9]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[GLY]][c] '''=>''' 1 [[5-PHOSPHO-RIBOSYL-GLYCINEAMIDE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[ACETYL-COA]][c] '''+''' 1 [[GLYOX]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[MAL]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ06408]]
+
* Gene: [[SJ14150]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 19: Line 19:
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis:
+
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
−
** '''6''' reactions found over '''5''' reactions in the full pathway
+
** '''10''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I:
+
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''10''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II:
+
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle:
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7294]], D-xylose degradation IV:
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7295]], L-arabinose degradation IV:
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7854]], crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered):
 +
** '''1''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-7118]], chitin degradation to ethanol:
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[GLYOXDEG-PWY]], glycolate and glyoxylate degradation II:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17453 17453]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18182 18182]
 +
* PIR:
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40715 I40715]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0195 JX0195]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0196 JX0196]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S15387 S15387]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17773 S17773]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17774 S17774]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26645 S26645]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S44186 S44186]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S48493 S48493]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S51788 S51788]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYCNMU SYCNMU]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYCSM2 SYCSM2]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYECMA SYECMA]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYHQMA SYHQMA]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYKVMA SYKVMA]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYRPMA SYRPMA]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T03412 T03412]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07690 T07690]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44752 T44752]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04144 R04144]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00472 R00472]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P07244 P07244]
+
** [http://www.uniprot.org/uniprot/P42450 P42450]
−
** [http://www.uniprot.org/uniprot/Q58347 Q58347]
+
** [http://www.uniprot.org/uniprot/Q02216 Q02216]
−
** [http://www.uniprot.org/uniprot/P12039 P12039]
+
** [http://www.uniprot.org/uniprot/P28344 P28344]
−
** [http://www.uniprot.org/uniprot/P21872 P21872]
+
** [http://www.uniprot.org/uniprot/P28345 P28345]
−
** [http://www.uniprot.org/uniprot/P15640 P15640]
+
** [http://www.uniprot.org/uniprot/P30952 P30952]
−
** [http://www.uniprot.org/uniprot/P00967 P00967]
+
** [http://www.uniprot.org/uniprot/Q43827 Q43827]
−
** [http://www.uniprot.org/uniprot/P16340 P16340]
+
** [http://www.uniprot.org/uniprot/P21826 P21826]
−
** [http://www.uniprot.org/uniprot/P22102 P22102]
+
** [http://www.uniprot.org/uniprot/P37330 P37330]
−
** [http://www.uniprot.org/uniprot/Q9JWU6 Q9JWU6]
+
** [http://www.uniprot.org/uniprot/P17432 P17432]
−
** [http://www.uniprot.org/uniprot/P43845 P43845]
+
** [http://www.uniprot.org/uniprot/P17815 P17815]
−
** [http://www.uniprot.org/uniprot/Q9PN47 Q9PN47]
+
** [http://www.uniprot.org/uniprot/P08997 P08997]
−
** [http://www.uniprot.org/uniprot/Q64737 Q64737]
+
** [http://www.uniprot.org/uniprot/P21360 P21360]
−
** [http://www.uniprot.org/uniprot/P20772 P20772]
+
** [http://www.uniprot.org/uniprot/P08216 P08216]
−
** [http://www.uniprot.org/uniprot/P26977 P26977]
+
** [http://www.uniprot.org/uniprot/P13244 P13244]
−
** [http://www.uniprot.org/uniprot/Q59492 Q59492]
+
** [http://www.uniprot.org/uniprot/P49081 P49081]
−
** [http://www.uniprot.org/uniprot/P74232 P74232]
+
** [http://www.uniprot.org/uniprot/P45458 P45458]
−
** [http://www.uniprot.org/uniprot/Q42804 Q42804]
+
** [http://www.uniprot.org/uniprot/O32913 O32913]
−
** [http://www.uniprot.org/uniprot/P52421 P52421]
 
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=phosphoribosylamine-glycine ligase}}
+
{{#set: common-name=malate synthase}}
−
{{#set: ec-number=ec-6.3.4.13}}
+
{{#set: ec-number=ec-2.3.3.9}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=8}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:37, 5 January 2021

Reaction MALSYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • malate synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase):
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
    • 10 reactions found over 12 reactions in the full pathway
  • GLYOXYLATE-BYPASS, glyoxylate cycle:
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7294, D-xylose degradation IV:
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-7295, L-arabinose degradation IV:
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-7854, crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered):
    • 1 reactions found over 14 reactions in the full pathway
  • PWY-7118, chitin degradation to ethanol:
    • 5 reactions found over 6 reactions in the full pathway
  • GLYOXDEG-PWY, glycolate and glyoxylate degradation II:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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