Difference between revisions of "RXN-16134"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AMPSYN-RXN AMPSYN-RXN] == * direction: ** reversible * common-name: ** adenylosuccinate lyase * ec-...")
(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5176 PWY-5176] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-3398 tax-33...")
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[[Category:reaction]]
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[[Category:pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AMPSYN-RXN AMPSYN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5176 PWY-5176] ==
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* direction:
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* taxonomic-range:
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** reversible
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-3398 tax-3398]
 
* common-name:
 
* common-name:
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** adenylosuccinate lyase
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** coumarin biosynthesis (via 2-coumarate)
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* ec-number:
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== Reaction(s) found ==
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** [http://enzyme.expasy.org/EC/4.3.2.2 ec-4.3.2.2]
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* [[RXN-8036]]
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== Reaction formula ==
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== Reaction(s) not found ==
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* 1 [[ADENYLOSUCC]][c] '''<=>''' 1 [[AMP]][c] '''+''' 1 [[FUM]][c]
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* [http://metacyc.org/META/NEW-IMAGE?object=TRANS-CINNAMATE-2-MONOOXYGENASE-RXN TRANS-CINNAMATE-2-MONOOXYGENASE-RXN]
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== Gene(s) associated with this reaction  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.114-RXN 2.4.1.114-RXN]
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* Gene: [[SJ06544]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8035 RXN-8035]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8037 RXN-8037]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: taxonomic-range=tax-3398}}
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** Category: [[orthology]]
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{{#set: common-name=coumarin biosynthesis (via 2-coumarate)}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: nb reaction found=1}}
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== Pathway(s) ==
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{{#set: completion rate=0.2}}
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* [[PWY-7219]], adenosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7219 PWY-7219]
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{{#set: nb total reaction=5}}
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** '''4''' reactions found over '''3''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16856 16856]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R01083 R01083]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P21265 P21265]
 
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** [http://www.uniprot.org/uniprot/Q58339 Q58339]
 
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** [http://www.uniprot.org/uniprot/Q9CF40 Q9CF40]
 
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** [http://www.uniprot.org/uniprot/Q9PJ88 Q9PJ88]
 
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** [http://www.uniprot.org/uniprot/Q9JSP3 Q9JSP3]
 
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** [http://www.uniprot.org/uniprot/P0AB89 P0AB89]
 
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** [http://www.uniprot.org/uniprot/O65180 O65180]
 
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** [http://www.uniprot.org/uniprot/P12047 P12047]
 
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{{#set: direction=reversible}}
 
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{{#set: common-name=adenylosuccinate lyase}}
 
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{{#set: ec-number=ec-4.3.2.2}}
 
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{{#set: nb gene associated=1}}
 
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{{#set: nb pathway associated=1}}
 
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{{#set: reconstruction category=orthology|annotation}}
 
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{{#set: reconstruction tool=pantograph|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 09:32, 27 August 2019

Pathway PWY-5176

  • taxonomic-range:
  • common-name:
    • coumarin biosynthesis (via 2-coumarate)

Reaction(s) found

Reaction(s) not found



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