Difference between revisions of "RXN-16137"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction RXN-11623 == * direction: ** left-to-right * common-name: ** farnesylcysteine lyase * ec-number: ** [http://enzyme.expasy.org/EC/1.8.3.6 ec-1...")
(Created page with "Category:reaction == Reaction RXN-17252 == * direction: ** left-to-right * common-name: ** pheophorbide a oxygenase == Reaction formula == * 1 CPD-7061[c] '''+''' 1 ...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-11623 ==
+
== Reaction RXN-17252 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** farnesylcysteine lyase
+
** pheophorbide a oxygenase
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/1.8.3.6 ec-1.8.3.6]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-12581]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[2-TRANS6-TRANS-FARNESAL]][c] '''+''' 1 [[CYS]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
+
* 1 [[CPD-7061]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 1 [[CPD-18666]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03172]]
+
* Gene: [[SJ17313]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ22311]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ08869]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ07178]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ00278]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ22309]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6577]], farnesylcysteine salvage pathway:
+
* [[PWY-6927]], chlorophyll a degradation II:
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5098]], chlorophyll a degradation I:
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R09562 R09562]
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30234 30234]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=48161 48161]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=farnesylcysteine lyase}}
+
{{#set: common-name=pheophorbide a oxygenase}}
−
{{#set: ec-number=ec-1.8.3.6}}
+
{{#set: nb gene associated=6}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb pathway associated=2}}
−
{{#set: nb pathway associated=1}}
 
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 13:15, 14 January 2021

Reaction RXN-17252

  • direction:
    • left-to-right
  • common-name:
    • pheophorbide a oxygenase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6927, chlorophyll a degradation II:
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-5098, chlorophyll a degradation I:
    • 2 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-16137&oldid=88556"