Difference between revisions of "RXN-16157"
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(Created page with "Category:reaction == Reaction RETINYL-PALMITATE-ESTERASE-RXN == * direction: ** left-to-right * common-name: ** retinyl-palmitate esterase ** carboxylic ester hydrolase **...") |
(Created page with "Category:reaction == Reaction S-ADENMETSYN-RXN == * direction: ** left-to-right * common-name: ** methionine adenosyltransferase * ec-number: ** [http://enzyme.expasy.org/...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction S-ADENMETSYN-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** methionine adenosyltransferase |
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* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/2.5.1.6 ec-2.5.1.6] |
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== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[ATP]][c] '''+''' 1 [[MET]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | + | * Gene: [[SJ07891]] | |
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− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
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== Pathway(s) == | == Pathway(s) == | ||
+ | * [[ETHYL-PWY]], ethylene biosynthesis I (plants): | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[METHIONINE-DEG1-PWY]], L-methionine degradation I (to L-homocysteine): | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[SAM-PWY]], S-adenosyl-L-methionine biosynthesis: | ||
+ | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
+ | * [[PWY-5912]], 2'-deoxymugineic acid phytosiderophore biosynthesis: | ||
+ | ** '''1''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-5041]], S-adenosyl-L-methionine cycle II: | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21081 21081] |
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00177 R00177] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P19358 P19358] | ||
+ | ** [http://www.uniprot.org/uniprot/P18298 P18298] | ||
+ | ** [http://www.uniprot.org/uniprot/Q91X83 Q91X83] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PNJ8 Q9PNJ8] | ||
+ | ** [http://www.uniprot.org/uniprot/P54419 P54419] | ||
+ | ** [http://www.uniprot.org/uniprot/P56460 P56460] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JVV6 Q9JVV6] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CEE0 Q9CEE0] | ||
+ | ** [http://www.uniprot.org/uniprot/O50163 O50163] | ||
+ | ** [http://www.uniprot.org/uniprot/P43762 P43762] | ||
+ | ** [http://www.uniprot.org/uniprot/P23686 P23686] | ||
+ | ** [http://www.uniprot.org/uniprot/P17562 P17562] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M4Y8 Q7M4Y8] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S992 Q9S992] | ||
+ | ** [http://www.uniprot.org/uniprot/Q90862 Q90862] | ||
+ | ** [http://www.uniprot.org/uniprot/P13444 P13444] | ||
+ | ** [http://www.uniprot.org/uniprot/P31153 P31153] | ||
+ | ** [http://www.uniprot.org/uniprot/Q00266 Q00266] | ||
+ | ** [http://www.uniprot.org/uniprot/P43281 P43281] | ||
+ | ** [http://www.uniprot.org/uniprot/P40320 P40320] | ||
+ | ** [http://www.uniprot.org/uniprot/P43280 P43280] | ||
+ | ** [http://www.uniprot.org/uniprot/P43282 P43282] | ||
+ | ** [http://www.uniprot.org/uniprot/P48498 P48498] | ||
+ | ** [http://www.uniprot.org/uniprot/P10659 P10659] | ||
+ | ** [http://www.uniprot.org/uniprot/Q39465 Q39465] | ||
+ | ** [http://www.uniprot.org/uniprot/P48466 P48466] | ||
+ | ** [http://www.uniprot.org/uniprot/P49612 P49612] | ||
+ | ** [http://www.uniprot.org/uniprot/P49613 P49613] | ||
+ | ** [http://www.uniprot.org/uniprot/P78003 P78003] | ||
+ | ** [http://www.uniprot.org/uniprot/Q49070 Q49070] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A817 P0A817] | ||
+ | ** [http://www.uniprot.org/uniprot/P50299 P50299] | ||
+ | ** [http://www.uniprot.org/uniprot/O22350 O22350] | ||
+ | ** [http://www.uniprot.org/uniprot/P24260 P24260] | ||
+ | ** [http://www.uniprot.org/uniprot/O60198 O60198] | ||
+ | ** [http://www.uniprot.org/uniprot/Q12642 Q12642] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=methionine adenosyltransferase}} |
− | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-2.5.1.6}} |
− | + | {{#set: nb gene associated=1}} | |
− | {{#set: nb gene associated= | + | {{#set: nb pathway associated=5}} |
− | {{#set: nb pathway associated= | ||
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 15:31, 5 January 2021
Contents
Reaction S-ADENMETSYN-RXN
- direction:
- left-to-right
- common-name:
- methionine adenosyltransferase
- ec-number:
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ07891
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- ETHYL-PWY, ethylene biosynthesis I (plants):
- 3 reactions found over 3 reactions in the full pathway
- METHIONINE-DEG1-PWY, L-methionine degradation I (to L-homocysteine):
- 2 reactions found over 3 reactions in the full pathway
- SAM-PWY, S-adenosyl-L-methionine biosynthesis:
- 1 reactions found over 1 reactions in the full pathway
- PWY-5912, 2'-deoxymugineic acid phytosiderophore biosynthesis:
- 1 reactions found over 4 reactions in the full pathway
- PWY-5041, S-adenosyl-L-methionine cycle II:
- 3 reactions found over 4 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links