Difference between revisions of "RXN-16158"

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(Created page with "Category:reaction == Reaction LYSINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** lysine-trna ligase * ec-number: ** [http://enzyme.expasy.org/EC/6....")
(Created page with "Category:reaction == Reaction HOMOCYSMET-RXN == * direction: ** reversible * common-name: ** cobalamin-independent homocysteine transmethylase * ec-number: ** [http://enzy...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction LYSINE--TRNA-LIGASE-RXN ==
+
== Reaction HOMOCYSMET-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** lysine-trna ligase
+
** cobalamin-independent homocysteine transmethylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.6 ec-6.1.1.6]
+
** [http://enzyme.expasy.org/EC/2.1.1.14 ec-2.1.1.14]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[LYS]][c] '''+''' 1 [[LYS-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-LYS-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[CPD-1302]][c] '''+''' 1 [[HOMO-CYS]][c] '''<=>''' 1 [[CPD-1301]][c] '''+''' 1 [[MET]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21008]]
+
* Gene: [[SJ03226]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ12237]]
+
* Gene: [[SJ10794]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ21009]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
+
* [[PWY-5041]], S-adenosyl-L-methionine cycle II:
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[HSERMETANA-PWY]], L-methionine biosynthesis III:
 +
** '''3''' reactions found over '''2''' reactions in the full pathway
 +
* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I:
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6151]], S-adenosyl-L-methionine cycle I:
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-702]], L-methionine biosynthesis II (plants):
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20793 20793]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21199 21199]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03658 R03658]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04405 R04405]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P41258 P41258]
+
** [http://www.uniprot.org/uniprot/P25665 P25665]
−
** [http://www.uniprot.org/uniprot/P46861 P46861]
+
** [http://www.uniprot.org/uniprot/P45331 P45331]
−
** [http://www.uniprot.org/uniprot/P47382 P47382]
+
** [http://www.uniprot.org/uniprot/Q9PN94 Q9PN94]
−
** [http://www.uniprot.org/uniprot/O57963 O57963]
+
** [http://www.uniprot.org/uniprot/O26869 O26869]
−
** [http://www.uniprot.org/uniprot/O51603 O51603]
+
** [http://www.uniprot.org/uniprot/Q9JUT6 Q9JUT6]
−
** [http://www.uniprot.org/uniprot/Q9JTT7 Q9JTT7]
+
** [http://www.uniprot.org/uniprot/Q9CG55 Q9CG55]
−
** [http://www.uniprot.org/uniprot/O83650 O83650]
+
** [http://www.uniprot.org/uniprot/P05694 P05694]
−
** [http://www.uniprot.org/uniprot/Q9X231 Q9X231]
+
** [http://www.uniprot.org/uniprot/Q42699 Q42699]
−
** [http://www.uniprot.org/uniprot/P43825 P43825]
+
** [http://www.uniprot.org/uniprot/Q39586 Q39586]
−
** [http://www.uniprot.org/uniprot/Q9ZDF8 Q9ZDF8]
+
** [http://www.uniprot.org/uniprot/O48613 O48613]
−
** [http://www.uniprot.org/uniprot/O84786 O84786]
+
** [http://www.uniprot.org/uniprot/P93263 P93263]
−
** [http://www.uniprot.org/uniprot/Q9Z6X5 Q9Z6X5]
+
** [http://www.uniprot.org/uniprot/Q9UT19 Q9UT19]
−
** [http://www.uniprot.org/uniprot/Q9CII7 Q9CII7]
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/P56126 P56126]
+
{{#set: common-name=cobalamin-independent homocysteine transmethylase}}
−
** [http://www.uniprot.org/uniprot/Q9ZMP8 Q9ZMP8]
+
{{#set: ec-number=ec-2.1.1.14}}
−
** [http://www.uniprot.org/uniprot/O67258 O67258]
+
{{#set: nb gene associated=2}}
−
** [http://www.uniprot.org/uniprot/O84002 O84002]
+
{{#set: nb pathway associated=5}}
−
** [http://www.uniprot.org/uniprot/Q9RHV9 Q9RHV9]
 
−
** [http://www.uniprot.org/uniprot/P32048 P32048]
 
−
** [http://www.uniprot.org/uniprot/P37879 P37879]
 
−
** [http://www.uniprot.org/uniprot/Q48986 Q48986]
 
−
** [http://www.uniprot.org/uniprot/P0A8N7 P0A8N7]
 
−
** [http://www.uniprot.org/uniprot/P37477 P37477]
 
−
** [http://www.uniprot.org/uniprot/P75500 P75500]
 
−
** [http://www.uniprot.org/uniprot/P95970 P95970]
 
−
** [http://www.uniprot.org/uniprot/P73443 P73443]
 
−
** [http://www.uniprot.org/uniprot/P15180 P15180]
 
−
** [http://www.uniprot.org/uniprot/P0A8N3 P0A8N3]
 
−
** [http://www.uniprot.org/uniprot/P0A8N5 P0A8N5]
 
−
** [http://www.uniprot.org/uniprot/Q43776 Q43776]
 
−
** [http://www.uniprot.org/uniprot/O74059 O74059]
 
−
** [http://www.uniprot.org/uniprot/O30522 O30522]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=lysine-trna ligase}}
 
−
{{#set: ec-number=ec-6.1.1.6}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=1}}
 
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:20, 15 January 2021

Reaction HOMOCYSMET-RXN

  • direction:
    • reversible
  • common-name:
    • cobalamin-independent homocysteine transmethylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5041, S-adenosyl-L-methionine cycle II:
    • 3 reactions found over 4 reactions in the full pathway
  • HSERMETANA-PWY, L-methionine biosynthesis III:
    • 3 reactions found over 2 reactions in the full pathway
  • HOMOSER-METSYN-PWY, L-methionine biosynthesis I:
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-6151, S-adenosyl-L-methionine cycle I:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-702, L-methionine biosynthesis II (plants):
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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