Difference between revisions of "RXN-16426"

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(Created page with "Category:reaction == Reaction CYSTATHIONINE-BETA-SYNTHASE-RXN == * direction: ** reversible * common-name: ** cystathionine β-synthase * ec-number: ** [http://enzyme....")
(Created page with "Category:reaction == Reaction RXN-12019 == * direction: ** left-to-right * common-name: ** phosphoadenylyl-sulfate reductase * ec-number: ** [http://enzyme.expasy.org/EC/1...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction CYSTATHIONINE-BETA-SYNTHASE-RXN ==
+
== Reaction RXN-12019 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** cystathionine β-synthase
+
** phosphoadenylyl-sulfate reductase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.22 ec-4.2.1.22]
+
** [http://enzyme.expasy.org/EC/1.8.4.10 ec-1.8.4.10]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[HOMO-CYS]][c] '''+''' 1 [[SER]][c] '''<=>''' 1 [[L-CYSTATHIONINE]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[APS]][c] '''+''' 1 [[Red-Thioredoxin]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Ox-Thioredoxin]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[SO3]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ15937]]
+
* Gene: [[SJ19972]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ20026]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15938]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[HOMOCYSDEGR-PWY]], L-cysteine biosynthesis III (from L-homocysteine):
+
* [[PWY-6683]], assimilatory sulfate reduction III:
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-I9]], L-cysteine biosynthesis VI (from L-methionine):
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-801]], homocysteine and cysteine interconversion:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R07176 R07176]
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10115 10115]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21979 21979]
−
* LIGAND-RXN:
+
{{#set: direction=left-to-right}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01290 R01290]
+
{{#set: common-name=phosphoadenylyl-sulfate reductase}}
−
* UNIPROT:
+
{{#set: ec-number=ec-1.8.4.10}}
−
** [http://www.uniprot.org/uniprot/P32232 P32232]
+
{{#set: nb gene associated=1}}
−
** [http://www.uniprot.org/uniprot/P32582 P32582]
+
{{#set: nb pathway associated=1}}
−
** [http://www.uniprot.org/uniprot/P35520 P35520]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/Q9YCN5 Q9YCN5]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q12633 Q12633]
 
−
** [http://www.uniprot.org/uniprot/P72662 P72662]
 
−
** [http://www.uniprot.org/uniprot/O59701 O59701]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=cystathionine &beta;-synthase}}
 
−
{{#set: ec-number=ec-4.2.1.22}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=3}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:34, 5 January 2021

Reaction RXN-12019

  • direction:
    • left-to-right
  • common-name:
    • phosphoadenylyl-sulfate reductase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6683, assimilatory sulfate reduction III:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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