Difference between revisions of "RXN-16602"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.34-RXN 1.1.1.34-RXN] == * direction: ** reversible * common-name: ** hydroxymethylglutaryl-co...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17778 RXN-17778] == * direction: ** left-to-right * common-name: ** 3-ketoacyl-coa thiolase **...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.34-RXN 1.1.1.34-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17778 RXN-17778] ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** hydroxymethylglutaryl-coa reductase
+
** 3-ketoacyl-coa thiolase
 +
** acetyl-coa c-acyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.34 ec-1.1.1.34]
+
** [http://enzyme.expasy.org/EC/2.3.1.16 ec-2.3.1.16]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CO-A]][c] '''+''' 1 [[MEVALONATE]][c] '''+''' 2 [[NADP]][c] '''<=>''' 1 [[3-HYDROXY-3-METHYL-GLUTARYL-COA]][c] '''+''' 2 [[NADPH]][c] '''+''' 2 [[PROTON]][c]
+
* 1 [[CO-A]][c] '''+''' 1 [[CPD-19169]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[CPD-19144]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18779]]
+
* Gene: [[SJ21817]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ16470]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ18136]]
+
* Gene: [[SJ09371]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ05150]]
+
* Gene: [[SJ14898]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21818]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6174]], mevalonate pathway II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6174 PWY-6174]
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
 
−
** '''7''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7524]], mevalonate pathway III (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7524 PWY-7524]
 
−
** '''5''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
{{#set: direction=left-to-right}}
−
* RHEA:
+
{{#set: common-name=3-ketoacyl-coa thiolase|acetyl-coa c-acyltransferase}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15992 15992]
+
{{#set: ec-number=ec-2.3.1.16}}
−
* LIGAND-RXN:
+
{{#set: nb gene associated=5}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R02082 R02082]
+
{{#set: nb pathway associated=0}}
−
* UNIPROT:
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P16393 P16393]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P14891 P14891]
 
−
** [http://www.uniprot.org/uniprot/P16237 P16237]
 
−
** [http://www.uniprot.org/uniprot/P20715 P20715]
 
−
** [http://www.uniprot.org/uniprot/Q59468 Q59468]
 
−
** [http://www.uniprot.org/uniprot/Q01237 Q01237]
 
−
** [http://www.uniprot.org/uniprot/Q61671 Q61671]
 
−
** [http://www.uniprot.org/uniprot/Q944T9 Q944T9]
 
−
** [http://www.uniprot.org/uniprot/Q9S9C2 Q9S9C2]
 
−
** [http://www.uniprot.org/uniprot/Q9S999 Q9S999]
 
−
** [http://www.uniprot.org/uniprot/Q9S998 Q9S998]
 
−
** [http://www.uniprot.org/uniprot/Q9S997 Q9S997]
 
−
** [http://www.uniprot.org/uniprot/P04035 P04035]
 
−
** [http://www.uniprot.org/uniprot/P00347 P00347]
 
−
** [http://www.uniprot.org/uniprot/P29058 P29058]
 
−
** [http://www.uniprot.org/uniprot/P29057 P29057]
 
−
** [http://www.uniprot.org/uniprot/Q12577 Q12577]
 
−
** [http://www.uniprot.org/uniprot/Q12649 Q12649]
 
−
** [http://www.uniprot.org/uniprot/Q00583 Q00583]
 
−
** [http://www.uniprot.org/uniprot/Q01559 Q01559]
 
−
** [http://www.uniprot.org/uniprot/P48022 P48022]
 
−
** [http://www.uniprot.org/uniprot/Q43825 Q43825]
 
−
** [http://www.uniprot.org/uniprot/Q43826 Q43826]
 
−
** [http://www.uniprot.org/uniprot/P14773 P14773]
 
−
** [http://www.uniprot.org/uniprot/Q7M4W2 Q7M4W2]
 
−
** [http://www.uniprot.org/uniprot/Q7M4W1 Q7M4W1]
 
−
** [http://www.uniprot.org/uniprot/Q7M4W4 Q7M4W4]
 
−
** [http://www.uniprot.org/uniprot/Q7M4W3 Q7M4W3]
 
−
** [http://www.uniprot.org/uniprot/P48019 P48019]
 
−
** [http://www.uniprot.org/uniprot/Q41454 Q41454]
 
−
** [http://www.uniprot.org/uniprot/Q42506 Q42506]
 
−
** [http://www.uniprot.org/uniprot/Q41455 Q41455]
 
−
** [http://www.uniprot.org/uniprot/Q41456 Q41456]
 
−
** [http://www.uniprot.org/uniprot/Q41458 Q41458]
 
−
** [http://www.uniprot.org/uniprot/P48020 P48020]
 
−
** [http://www.uniprot.org/uniprot/Q9FS01 Q9FS01]
 
−
** [http://www.uniprot.org/uniprot/Q42466 Q42466]
 
−
** [http://www.uniprot.org/uniprot/O48624 O48624]
 
−
** [http://www.uniprot.org/uniprot/O04188 O04188]
 
−
** [http://www.uniprot.org/uniprot/O24594 O24594]
 
−
** [http://www.uniprot.org/uniprot/Q41438 Q41438]
 
−
** [http://www.uniprot.org/uniprot/O64966 O64966]
 
−
** [http://www.uniprot.org/uniprot/O64967 O64967]
 
−
** [http://www.uniprot.org/uniprot/Q03163 Q03163]
 
−
** [http://www.uniprot.org/uniprot/Q39628 Q39628]
 
−
** [http://www.uniprot.org/uniprot/P93514 P93514]
 
−
** [http://www.uniprot.org/uniprot/O08424 O08424]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=hydroxymethylglutaryl-coa reductase}}
 
−
{{#set: ec-number=ec-1.1.1.34}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=4}}
 
−
{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 14:25, 26 August 2019

Reaction RXN-17778

  • direction:
    • left-to-right
  • common-name:
    • 3-ketoacyl-coa thiolase
    • acetyl-coa c-acyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-16602&oldid=22861"