Difference between revisions of "RXN-16621"

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(Created page with "Category:reaction == Reaction GLUCISOM-RXN == * direction: ** reversible * common-name: ** glucose isomerase * ec-number: ** [http://enzyme.expasy.org/EC/5.3.1.5 ec-5.3.1....")
(Created page with "Category:reaction == Reaction RXN-16621 == * direction: ** left-to-right * common-name: ** 3-oxoacyl-[acyl-carrier-protein] synthase * ec-number: ** [http://enzyme.expasy....")
 
(6 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLUCISOM-RXN ==
+
== Reaction RXN-16621 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** glucose isomerase
+
** 3-oxoacyl-[acyl-carrier-protein] synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.3.1.5 ec-5.3.1.5]
+
** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
 +
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Glucopyranose]][c] '''<=>''' 1 [[CPD-15382]][c]
+
* 1 [[5Z-tetradec-5-enoyl-ACPs]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[7Z-3-oxo-hexadec-7-enoyl-ACPs]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ15984]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ04443]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ15983]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18059]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10624]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06617]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00005]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7664]], oleate biosynthesis IV (anaerobic):
 +
** '''13''' reactions found over '''14''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR120241
−
* LIGAND-RXN:
+
{{#set: direction=left-to-right}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00307 R00307]
+
{{#set: common-name=3-oxoacyl-[acyl-carrier-protein] synthase}}
−
* RHEA:
+
{{#set: ec-number=ec-2.3.1.41|ec-2.3.1.179}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28549 28549]
+
{{#set: nb gene associated=7}}
−
* UNIPROT:
+
{{#set: nb pathway associated=1}}
−
** [http://www.uniprot.org/uniprot/P19149 P19149]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/P24300 P24300]
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q9CFG7 Q9CFG7]
+
{{#set: reconstruction comment=n.a}}
−
** [http://www.uniprot.org/uniprot/P29441 P29441]
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
−
** [http://www.uniprot.org/uniprot/P04788 P04788]
 
−
** [http://www.uniprot.org/uniprot/P19148 P19148]
 
−
** [http://www.uniprot.org/uniprot/P00944 P00944]
 
−
** [http://www.uniprot.org/uniprot/P44398 P44398]
 
−
** [http://www.uniprot.org/uniprot/P29442 P29442]
 
−
** [http://www.uniprot.org/uniprot/P10654 P10654]
 
−
** [http://www.uniprot.org/uniprot/P12851 P12851]
 
−
** [http://www.uniprot.org/uniprot/P22857 P22857]
 
−
** [http://www.uniprot.org/uniprot/P09033 P09033]
 
−
** [http://www.uniprot.org/uniprot/P29443 P29443]
 
−
** [http://www.uniprot.org/uniprot/Q7M0V2 Q7M0V2]
 
−
** [http://www.uniprot.org/uniprot/Q7M0V4 Q7M0V4]
 
−
** [http://www.uniprot.org/uniprot/Q7M0V3 Q7M0V3]
 
−
** [http://www.uniprot.org/uniprot/P12070 P12070]
 
−
** [http://www.uniprot.org/uniprot/P27157 P27157]
 
−
** [http://www.uniprot.org/uniprot/P21938 P21938]
 
−
** [http://www.uniprot.org/uniprot/P15587 P15587]
 
−
** [http://www.uniprot.org/uniprot/Q40082 Q40082]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=glucose isomerase}}
 
−
{{#set: ec-number=ec-5.3.1.5}}
 
−
{{#set: nb gene associated=0}}
 
−
{{#set: nb pathway associated=0}}
 
−
{{#set: reconstruction category=gap-filling}}
 
−
{{#set: reconstruction tool=meneco}}
 
−
{{#set: reconstruction comment=added for gapfilling}}
 
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
 

Latest revision as of 11:23, 18 March 2021

Reaction RXN-16621

  • direction:
    • left-to-right
  • common-name:
    • 3-oxoacyl-[acyl-carrier-protein] synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7664, oleate biosynthesis IV (anaerobic):
    • 13 reactions found over 14 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR120241

Property "Common-name" (as page type) with input value "3-oxoacyl-[acyl-carrier-protein] synthase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




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