Difference between revisions of "RXN-16909"

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(Created page with "Category:reaction == Reaction PYRIDOXINE-4-DEHYDROGENASE-RXN == * direction: ** reversible * common-name: ** pyridoxine 4-dehydrogenase/pyridoxal reductase * ec-number: **...")
(Created page with "Category:reaction == Reaction GLUTAMATE-SYNTHASE-FERREDOXIN-RXN == * direction: ** left-to-right * common-name: ** glutamate synthase (ferredoxin) * ec-number: ** [http://...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PYRIDOXINE-4-DEHYDROGENASE-RXN ==
+
== Reaction GLUTAMATE-SYNTHASE-FERREDOXIN-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** pyridoxine 4-dehydrogenase/pyridoxal reductase
+
** glutamate synthase (ferredoxin)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.65 ec-1.1.1.65]
+
** [http://enzyme.expasy.org/EC/1.4.7.1 ec-1.4.7.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NADP]][c] '''+''' 1 [[PYRIDOXINE]][c] '''<=>''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRIDOXAL]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[GLN]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 2 [[GLT]][c] '''+''' 2 [[Oxidized-ferredoxins]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ15799]]
+
* Gene: [[SJ04922]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ20140]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ04921]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12700]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ13463]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10812]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7204]], pyridoxal 5'-phosphate salvage II (plants):
+
* [[PWY-6549]], L-glutamine biosynthesis III:
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7282]], 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis:
+
* [[PWY-4341]], L-glutamate biosynthesis V:
−
** '''6''' reactions found over '''10''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-6964]], ammonia assimilation cycle II:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16132 16132]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12130 12130]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01708 R01708]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00021 R00021]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/O14295 O14295]
+
** [http://www.uniprot.org/uniprot/P23225 P23225]
−
{{#set: direction=reversible}}
+
** [http://www.uniprot.org/uniprot/O67512 O67512]
−
{{#set: common-name=pyridoxine 4-dehydrogenase/pyridoxal reductase}}
+
** [http://www.uniprot.org/uniprot/P96218 P96218]
−
{{#set: ec-number=ec-1.1.1.65}}
+
** [http://www.uniprot.org/uniprot/Q06434 Q06434]
−
{{#set: nb gene associated=2}}
+
** [http://www.uniprot.org/uniprot/Q43081 Q43081]
−
{{#set: nb pathway associated=2}}
+
** [http://www.uniprot.org/uniprot/P55037 P55037]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/Q43155 Q43155]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/Q7M242 Q7M242]
 +
** [http://www.uniprot.org/uniprot/P51375 P51375]
 +
** [http://www.uniprot.org/uniprot/P55038 P55038]
 +
** [http://www.uniprot.org/uniprot/Q9SLM4 Q9SLM4]
 +
** [http://www.uniprot.org/uniprot/Q08258 Q08258]
 +
** [http://www.uniprot.org/uniprot/O49154 O49154]
 +
** [http://www.uniprot.org/uniprot/O19906 O19906]
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=glutamate synthase (ferredoxin)}}
 +
{{#set: ec-number=ec-1.4.7.1}}
 +
{{#set: nb gene associated=5}}
 +
{{#set: nb pathway associated=3}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:18, 14 January 2021

Reaction GLUTAMATE-SYNTHASE-FERREDOXIN-RXN

  • direction:
    • left-to-right
  • common-name:
    • glutamate synthase (ferredoxin)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6549, L-glutamine biosynthesis III:
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-4341, L-glutamate biosynthesis V:
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6964, ammonia assimilation cycle II:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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