Difference between revisions of "RXN-16910"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HBCO_LPAREN_nadp_RPAREN_m HBCO_LPAREN_nadp_RPAREN_m] == * direction: ** reversible * common-name: *...")
(Created page with "Category:reaction == Reaction PHENYLALANINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** phenylalanine-trna ligase * ec-number: ** [http://enzyme.ex...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HBCO_LPAREN_nadp_RPAREN_m HBCO_LPAREN_nadp_RPAREN_m] ==
+
== Reaction PHENYLALANINE--TRNA-LIGASE-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-hydroxybutanoyl-coa:nadp+ oxidoreductase, mitochondria
+
** phenylalanine-trna ligase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/6.1.1.20 ec-6.1.1.20]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[ACETOACETYL-COA]][m] '''+''' 1.0 [[NADPH]][m] '''+''' 1.0 [[PROTON]][m] '''<=>''' 1.0 [[NADP]][m] '''+''' 1.0 [[S-3-HYDROXYBUTANOYL-COA]][m]
+
* 1 [[ATP]][c] '''+''' 1 [[PHE]][c] '''+''' 1 [[PHE-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-PHE-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ17348]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ04988]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07745]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20176]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20825]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10005]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[TRNA-CHARGING-PWY]], tRNA charging:
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
{{#set: common-name=3-hydroxybutanoyl-coa:nadp+ oxidoreductase, mitochondria}}
+
* RHEA:
−
{{#set: nb gene associated=1}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19414 19414]
−
{{#set: nb pathway associated=0}}
+
* LIGAND-RXN:
−
{{#set: reconstruction category=orthology}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R03660 R03660]
−
{{#set: reconstruction tool=pantograph}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P94283 P94283]
 +
** [http://www.uniprot.org/uniprot/Q9ZDB4 Q9ZDB4]
 +
** [http://www.uniprot.org/uniprot/Q9WZS9 Q9WZS9]
 +
** [http://www.uniprot.org/uniprot/Q9PP34 Q9PP34]
 +
** [http://www.uniprot.org/uniprot/P56145 P56145]
 +
** [http://www.uniprot.org/uniprot/O67620 O67620]
 +
** [http://www.uniprot.org/uniprot/O73984 O73984]
 +
** [http://www.uniprot.org/uniprot/Q9Z6R6 Q9Z6R6]
 +
** [http://www.uniprot.org/uniprot/Q58508 Q58508]
 +
** [http://www.uniprot.org/uniprot/P56146 P56146]
 +
** [http://www.uniprot.org/uniprot/O27545 O27545]
 +
** [http://www.uniprot.org/uniprot/O26837 O26837]
 +
** [http://www.uniprot.org/uniprot/O58391 O58391]
 +
** [http://www.uniprot.org/uniprot/O83938 O83938]
 +
** [http://www.uniprot.org/uniprot/P47436 P47436]
 +
** [http://www.uniprot.org/uniprot/O67087 O67087]
 +
** [http://www.uniprot.org/uniprot/O83059 O83059]
 +
** [http://www.uniprot.org/uniprot/O84843 O84843]
 +
** [http://www.uniprot.org/uniprot/Q9UYX3 Q9UYX3]
 +
** [http://www.uniprot.org/uniprot/Q9Z7W0 Q9Z7W0]
 +
** [http://www.uniprot.org/uniprot/Q9PJR8 Q9PJR8]
 +
** [http://www.uniprot.org/uniprot/P47437 P47437]
 +
** [http://www.uniprot.org/uniprot/Q9ZKF9 Q9ZKF9]
 +
** [http://www.uniprot.org/uniprot/Q9UYX2 Q9UYX2]
 +
** [http://www.uniprot.org/uniprot/Q9ZKF8 Q9ZKF8]
 +
** [http://www.uniprot.org/uniprot/Q9JR76 Q9JR76]
 +
** [http://www.uniprot.org/uniprot/Q57911 Q57911]
 +
** [http://www.uniprot.org/uniprot/P43819 P43819]
 +
** [http://www.uniprot.org/uniprot/P94282 P94282]
 +
** [http://www.uniprot.org/uniprot/O84481 O84481]
 +
** [http://www.uniprot.org/uniprot/Q9ZDB5 Q9ZDB5]
 +
** [http://www.uniprot.org/uniprot/Q9WZS8 Q9WZS8]
 +
** [http://www.uniprot.org/uniprot/Q9RRX8 Q9RRX8]
 +
** [http://www.uniprot.org/uniprot/Q9PP35 Q9PP35]
 +
** [http://www.uniprot.org/uniprot/P43820 P43820]
 +
** [http://www.uniprot.org/uniprot/Q46107 Q46107]
 +
** [http://www.uniprot.org/uniprot/P15434 P15434]
 +
** [http://www.uniprot.org/uniprot/Q5SGX1 Q5SGX1]
 +
** [http://www.uniprot.org/uniprot/P37984 P37984]
 +
** [http://www.uniprot.org/uniprot/P51346 P51346]
 +
** [http://www.uniprot.org/uniprot/P75563 P75563]
 +
** [http://www.uniprot.org/uniprot/P75564 P75564]
 +
** [http://www.uniprot.org/uniprot/Q55187 Q55187]
 +
** [http://www.uniprot.org/uniprot/P95960 P95960]
 +
** [http://www.uniprot.org/uniprot/P95961 P95961]
 +
** [http://www.uniprot.org/uniprot/Q49032 Q49032]
 +
** [http://www.uniprot.org/uniprot/P08312 P08312]
 +
** [http://www.uniprot.org/uniprot/P07395 P07395]
 +
** [http://www.uniprot.org/uniprot/O42870 O42870]
 +
** [http://www.uniprot.org/uniprot/O13432 O13432]
 +
** [http://www.uniprot.org/uniprot/Q9GYS8 Q9GYS8]
 +
** [http://www.uniprot.org/uniprot/O42849 O42849]
 +
** [http://www.uniprot.org/uniprot/P17921 P17921]
 +
** [http://www.uniprot.org/uniprot/P17922 P17922]
 +
** [http://www.uniprot.org/uniprot/P15625 P15625]
 +
** [http://www.uniprot.org/uniprot/P08425 P08425]
 +
** [http://www.uniprot.org/uniprot/P15624 P15624]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=phenylalanine-trna ligase}}
 +
{{#set: ec-number=ec-6.1.1.20}}
 +
{{#set: nb gene associated=5}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 20:39, 18 December 2020

Reaction PHENYLALANINE--TRNA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • phenylalanine-trna ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links





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