Difference between revisions of "RXN-16991"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction PROTOPORGENOXI-RXN == * direction: ** left-to-right * common-name: ** protoporphyrinogen oxidase * ec-number: ** [http://enzyme.expasy.org/EC...")
(Created page with "Category:reaction == Reaction RXN-16991 == * direction: ** left-to-right * common-name: ** n-3-epoxysuccinamoyl-(s)-2,3-diaminopropanoyl-l-valine synthase * ec-number: **...")
 
(6 intermediate revisions by 3 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PROTOPORGENOXI-RXN ==
+
== Reaction RXN-16991 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** protoporphyrinogen oxidase
+
** n-3-epoxysuccinamoyl-(s)-2,3-diaminopropanoyl-l-valine synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.3.4 ec-1.3.3.4]
+
** [http://enzyme.expasy.org/EC/6.3.2.47 ec-6.3.2.47]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 3 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c] '''=>''' 3 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[PROTOPORPHYRIN_IX]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CPD-18319]][c] '''+''' 1 [[VAL]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[CPD-18309]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21798]]
+
* Gene: [[SJ11003]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ05967]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
+
* [[PWY-7706]], dapdiamides biosynthesis:
−
** '''5''' reactions found over '''9''' reactions in the full pathway
+
** '''4''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III:
 
−
** '''5''' reactions found over '''4''' reactions in the full pathway
 
−
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic):
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR120561
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25577 25577]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03222 R03222]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P50336 P50336]
 
−
** [http://www.uniprot.org/uniprot/Q49404 Q49404]
 
−
** [http://www.uniprot.org/uniprot/Q9CHX0 Q9CHX0]
 
−
** [http://www.uniprot.org/uniprot/P0ACB4 P0ACB4]
 
−
** [http://www.uniprot.org/uniprot/Q7M1R6 Q7M1R6]
 
−
** [http://www.uniprot.org/uniprot/P51175 P51175]
 
−
** [http://www.uniprot.org/uniprot/O24163 O24163]
 
−
** [http://www.uniprot.org/uniprot/O24164 O24164]
 
−
** [http://www.uniprot.org/uniprot/O64384 O64384]
 
−
** [http://www.uniprot.org/uniprot/O64385 O64385]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=protoporphyrinogen oxidase}}
+
{{#set: common-name=n-3-epoxysuccinamoyl-(s)-2,3-diaminopropanoyl-l-valine synthase}}
−
{{#set: ec-number=ec-1.3.3.4}}
+
{{#set: ec-number=ec-6.3.2.47}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction RXN-16991

  • direction:
    • left-to-right
  • common-name:
    • n-3-epoxysuccinamoyl-(s)-2,3-diaminopropanoyl-l-valine synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7706, dapdiamides biosynthesis:
    • 4 reactions found over 13 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR120561





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-16991&oldid=142980"