Difference between revisions of "RXN-16991"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P321-PWY P321-PWY] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2] *...")
(Created page with "Category:reaction == Reaction PROTOPORGENOXI-RXN == * direction: ** left-to-right * common-name: ** protoporphyrinogen oxidase * ec-number: ** [http://enzyme.expasy.org/EC...")
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P321-PWY P321-PWY] ==
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== Reaction PROTOPORGENOXI-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]
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** left-to-right
 
* common-name:
 
* common-name:
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** benzoyl-coa degradation iii (anaerobic)
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** protoporphyrinogen oxidase
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== Reaction(s) found ==
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* ec-number:
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* [[RXN-8032]]
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** [http://enzyme.expasy.org/EC/1.3.3.4 ec-1.3.3.4]
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== Reaction(s) not found ==
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== Reaction formula ==
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* [http://metacyc.org/META/NEW-IMAGE?object=R267-RXN R267-RXN]
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* 3 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c] '''=>''' 3 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[PROTOPORPHYRIN_IX]][c]
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* [http://metacyc.org/META/NEW-IMAGE?object=R265-RXN R265-RXN]
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== Gene(s) associated with this reaction  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=1.3.99.15-RXN 1.3.99.15-RXN]
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* Gene: [[SJ21798]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8031 RXN-8031]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=R268-RXN R268-RXN]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=R266-RXN R266-RXN]
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** Category: [[orthology]]
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* [http://metacyc.org/META/NEW-IMAGE?object=1.3.1.62-RXN 1.3.1.62-RXN]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.259-RXN 1.1.1.259-RXN]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: taxonomic-range=tax-2}}
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== Pathway(s) ==
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{{#set: common-name=benzoyl-coa degradation iii (anaerobic)}}
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* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
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{{#set: nb reaction found=1}}
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** '''5''' reactions found over '''9''' reactions in the full pathway
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{{#set: completion rate=0.11}}
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* [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III:
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{{#set: nb total reaction=9}}
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** '''5''' reactions found over '''4''' reactions in the full pathway
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* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic):
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25577 25577]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R03222 R03222]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P50336 P50336]
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** [http://www.uniprot.org/uniprot/Q49404 Q49404]
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** [http://www.uniprot.org/uniprot/Q9CHX0 Q9CHX0]
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** [http://www.uniprot.org/uniprot/P0ACB4 P0ACB4]
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** [http://www.uniprot.org/uniprot/Q7M1R6 Q7M1R6]
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** [http://www.uniprot.org/uniprot/P51175 P51175]
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** [http://www.uniprot.org/uniprot/O24163 O24163]
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** [http://www.uniprot.org/uniprot/O24164 O24164]
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** [http://www.uniprot.org/uniprot/O64384 O64384]
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** [http://www.uniprot.org/uniprot/O64385 O64385]
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{{#set: direction=left-to-right}}
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{{#set: common-name=protoporphyrinogen oxidase}}
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{{#set: ec-number=ec-1.3.3.4}}
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{{#set: nb gene associated=1}}
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{{#set: nb pathway associated=4}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:46, 18 December 2020

Reaction PROTOPORGENOXI-RXN

  • direction:
    • left-to-right
  • common-name:
    • protoporphyrinogen oxidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
    • 5 reactions found over 9 reactions in the full pathway
  • PWY0-1415, superpathway of heme b biosynthesis from uroporphyrinogen-III:
    • 5 reactions found over 4 reactions in the full pathway
  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
    • 6 reactions found over 9 reactions in the full pathway
  • HEME-BIOSYNTHESIS-II, heme b biosynthesis I (aerobic):
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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