Difference between revisions of "RXN-16997"

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(Created page with "Category:reaction == Reaction D-OCTOPINE-DEHYDROGENASE-RXN == * direction: ** left-to-right * common-name: ** d-octopine dehydrogenase * ec-number: ** [http://enzyme.expas...")
(Created page with "Category:reaction == Reaction GLYCEROL-DEHYDRATASE-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.30 ec-4.2.1.30] == Reaction form...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction D-OCTOPINE-DEHYDROGENASE-RXN ==
+
== Reaction GLYCEROL-DEHYDRATASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
* common-name:
 
** d-octopine dehydrogenase
 
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/1.5 ec-1.5]
+
** [http://enzyme.expasy.org/EC/4.2.1.30 ec-4.2.1.30]
* synonymous:
 
** d-octopine synthase
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[Acceptor]][c] '''+''' 1 [[CPD-309]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ARG]][c] '''+''' 1 [[Donor-H2]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1 [[GLYCEROL]][c] '''=>''' 1 [[HYDROXYPROPANAL]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ15888]]
+
* Gene: [[SJ15896]]
** Category: [[annotation]]
+
** Category: [[orthology]]
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[OCTOPINEDEG-PWY]], octopine degradation:
+
* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered):
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6130]], glycerol degradation III:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
* UNIPROT:
+
* RHEA:
** [http://www.uniprot.org/uniprot/P0A395 P0A395]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19766 19766]
** [http://www.uniprot.org/uniprot/P0A394 P0A394]
+
* LIGAND-RXN:
** [http://www.uniprot.org/uniprot/Q44297 Q44297]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01047 R01047]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=d-octopine dehydrogenase}}
+
{{#set: ec-number=ec-4.2.1.30}}
{{#set: ec-number=ec-1.5}}
 
{{#set: synonymous=d-octopine synthase}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=2}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology}}
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Revision as of 19:01, 14 January 2021

Reaction GLYCEROL-DEHYDRATASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7385, 1,3-propanediol biosynthesis (engineered):
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-6130, glycerol degradation III:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links