Difference between revisions of "RXN-17013"

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(Created page with "Category:reaction == Reaction 3.1.27.9-RXN == * direction: ** left-to-right * common-name: ** trna-splicing endonuclease subunit sen2 * ec-number: ** [http://enzyme.expasy...")
(Created page with "Category:reaction == Reaction RXN-1882 == * direction: ** reversible * common-name: ** gdp-d-mannose 3'',5''-epimerase * ec-number: ** [http://enzyme.expasy.org/EC/5.1.3.1...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.1.27.9-RXN ==
+
== Reaction RXN-1882 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** trna-splicing endonuclease subunit sen2
+
** gdp-d-mannose 3'',5''-epimerase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.6.1.16 ec-4.6.1.16]
+
** [http://enzyme.expasy.org/EC/5.1.3.18 ec-5.1.3.18]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD0-2350]][c] '''=>''' 1 [[Pre-tRNA-3-prime-half-molecules]][c] '''+''' 1 [[Pre-tRNA-5-prime-half-molecules]][c] '''+''' 1 [[tRNA-Introns]][c]
+
* 1 [[GDP-MANNOSE]][c] '''<=>''' 1 [[GDP-L-GALACTOSE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ20336]]
+
* Gene: [[SJ02713]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ00058]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7803]], tRNA splicing II:
+
* [[PWY-5115]], GDP-L-galactose biosynthesis:
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6689]], tRNA splicing I:
+
* [[PWY4FS-13]], extended VTC2 cycle:
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY4FS-12]], VTC2 cycle:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-882]], L-ascorbate biosynthesis I (L-galactose pathway):
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
+
* RHEA:
−
** [http://www.uniprot.org/uniprot/O07118 O07118]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11147 11147]
−
{{#set: direction=left-to-right}}
+
* LIGAND-RXN:
−
{{#set: common-name=trna-splicing endonuclease subunit sen2}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00889 R00889]
−
{{#set: ec-number=ec-4.6.1.16}}
+
{{#set: direction=reversible}}
−
{{#set: nb gene associated=2}}
+
{{#set: common-name=gdp-d-mannose 3'',5''-epimerase}}
−
{{#set: nb pathway associated=2}}
+
{{#set: ec-number=ec-5.1.3.18}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: nb gene associated=1}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: nb pathway associated=4}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:15, 14 January 2021

Reaction RXN-1882

  • direction:
    • reversible
  • common-name:
    • gdp-d-mannose 3,5-epimerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5115, GDP-L-galactose biosynthesis:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY4FS-13, extended VTC2 cycle:
    • 2 reactions found over 3 reactions in the full pathway
  • PWY4FS-12, VTC2 cycle:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-882, L-ascorbate biosynthesis I (L-galactose pathway):
    • 6 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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